Uses of Package
edu.sdsc.mbt

Packages that use edu.sdsc.mbt

Default Package
edu.sdsc.mbt
edu.sdsc.mbt.filters	This package provides classes which enable filtering or subsetting of a structure's constituent components.
edu.sdsc.mbt.util	This package provides classes which implement extra functionality on top of the core MBT classes (that is, capabilities that are not absolutely required by, or would otherwise overcomplicate, the core classes).
edu.sdsc.mbt.viewables	This package provides classes which enable molecular biology data to be represented as visible/renderable viewable objects, plus, this package defines a top-level StructureDocument object to encapsulate the complete state of these objects and properties.
edu.sdsc.mbt.viewers.GLViewerImpl
edu.sdsc.sirius.builder
edu.sdsc.sirius.dialogs
edu.sdsc.sirius.io	This package provides classes which enable molecular biology data sets (such as protein structures, sequence data, etc) to be loaded into an MBT application as a Structure object.
edu.sdsc.sirius.monitors
edu.sdsc.sirius.rasmol
edu.sdsc.sirius.util
edu.sdsc.sirius.viewers
edu.sdsc.sirius.viewers.SequenceViewerImpl
edu.sdsc.sirius.viewers.TreeViewer
edu.sdsc.sirius.workbench

Classes in edu.sdsc.mbt used by Default Package

Structure
This class provides the primary interface for a molecular structure object.

Classes in edu.sdsc.mbt used by edu.sdsc.mbt

AnnotationComponent

Atom
Implements a StructureComponent container for atom data.

Bond
Implements a StructureComponent container for bond information.

Chain
Implements a StructureComponent container for chain information.

Conformation
Implements a an abstract StructureComponent container for conformation (secondary structure) data.

Fragment
Implements a StructureComponent container for secondary structure fragment information.

Residue
Implements a StructureComponent container for residue information.

Structure
This class provides the primary interface for a molecular structure object.

StructureComponent
Defines the abstract base class for a StructureComponent data container.

StructureComponentEvent
Properties, data, or the organizational structure of data changed.

StructureComponentIterator
Defines a standard interface to describe a filter implementation class.

StructureComponentRelation
A class used to store a single relationship description between two StructureComponent types (much like a relational link between tables in a database).

StructureMap
This class implements a derived data map for a Structure object.

Classes in edu.sdsc.mbt used by edu.sdsc.mbt.filters

StructureComponent
Defines the abstract base class for a StructureComponent data container.

StructureComponentRelation
A class used to store a single relationship description between two StructureComponent types (much like a relational link between tables in a database).

Classes in edu.sdsc.mbt used by edu.sdsc.mbt.util

Atom
Implements a StructureComponent container for atom data.

Structure
This class provides the primary interface for a molecular structure object.

StructureComponent
Defines the abstract base class for a StructureComponent data container.

StructureMap
This class implements a derived data map for a Structure object.

Classes in edu.sdsc.mbt used by edu.sdsc.mbt.viewables

Atom
Implements a StructureComponent container for atom data.

Bond
Implements a StructureComponent container for bond information.

Chain
Implements a StructureComponent container for chain information.

Fragment
Implements a StructureComponent container for secondary structure fragment information.

Residue
Implements a StructureComponent container for residue information.

Sequence

StructureComponent
Defines the abstract base class for a StructureComponent data container.

StructureComponentEvent
Properties, data, or the organizational structure of data changed.

StructureComponentEventListener
Properties, data, or the organizational structure of data changed.

StructureMap
This class implements a derived data map for a Structure object.

Classes in edu.sdsc.mbt used by edu.sdsc.mbt.viewers.GLViewerImpl

AnnotationComponent

Atom
Implements a StructureComponent container for atom data.

Bond
Implements a StructureComponent container for bond information.

Chain
Implements a StructureComponent container for chain information.

StructureComponent
Defines the abstract base class for a StructureComponent data container.

StructureMap
This class implements a derived data map for a Structure object.

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.builder

Structure
This class provides the primary interface for a molecular structure object.

StructureComponent
Defines the abstract base class for a StructureComponent data container.

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.dialogs

Atom
Implements a StructureComponent container for atom data.

Chain
Implements a StructureComponent container for chain information.

Residue
Implements a StructureComponent container for residue information.

Sequence

StructureComponent
Defines the abstract base class for a StructureComponent data container.

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.io

Atom
Implements a StructureComponent container for atom data.

Residue
Implements a StructureComponent container for residue information.

Sequence

Structure
This class provides the primary interface for a molecular structure object.

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.monitors

AnnotationComponent

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.rasmol

Structure
This class provides the primary interface for a molecular structure object.

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.util

Atom
Implements a StructureComponent container for atom data.

Bond
Implements a StructureComponent container for bond information.

Chain
Implements a StructureComponent container for chain information.

Structure
This class provides the primary interface for a molecular structure object.

StructureComponent
Defines the abstract base class for a StructureComponent data container.

StructureMap
This class implements a derived data map for a Structure object.

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.viewers

AnnotationComponent

Atom
Implements a StructureComponent container for atom data.

Chain
Implements a StructureComponent container for chain information.

HydrogenBondComponent

LabelComponent

MonitorComponent

Residue
Implements a StructureComponent container for residue information.

ResidueLabelComponent

Sequence

StericBumpComponent

Structure
This class provides the primary interface for a molecular structure object.

StructureComponent
Defines the abstract base class for a StructureComponent data container.

StructureComponentEvent
Properties, data, or the organizational structure of data changed.

StructureComponentEventListener
Properties, data, or the organizational structure of data changed.

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.viewers.SequenceViewerImpl

Residue
Implements a StructureComponent container for residue information.

Sequence

StructureComponentEventListener
Properties, data, or the organizational structure of data changed.

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.viewers.TreeViewer

Atom
Implements a StructureComponent container for atom data.

Residue
Implements a StructureComponent container for residue information.

Sequence

StructureComponent
Defines the abstract base class for a StructureComponent data container.

StructureComponentEvent
Properties, data, or the organizational structure of data changed.

StructureComponentEventListener
Properties, data, or the organizational structure of data changed.

Classes in edu.sdsc.mbt used by edu.sdsc.sirius.workbench

StructureComponent
Defines the abstract base class for a StructureComponent data container.