Package edu.sdsc.mbt.viewers.GLViewerImpl

Interface Summary

GlRenderable	Provides an interface with which the GlGeometryViewer class can render a visible representation of some data.
GvPickEventListener	GvPickEventListener.java Please complete these missing tags
MoveEventListener	GvPickEventListener.java Please complete these missing tags

Class Summary

AffineCrossSection	AffineCrossSection is the representation of a CrossSection objects tied to a given point in space.
AnnotationGeometry	This class provides the base functionality for geometry factory objects.
ArrowGeometry
AtomGeometry	AtomGeometry.java Please complete these missing tags
AtomLineGeometry	Construct a new object for generating bond geometry using default
BackboneLine	BackboneLine is a LineStripArray class optimized for representing a backbone trace.
BondGeometry	Construct a new object for generating bond geometry using default
BondGeometryUtils
ChainGeometry	ChainGeometry.java Please complete these missing tags
CoilGeometry	CoilGeometry is a SsGeometry container that, primarily, manages the geometry of a random coil.
CrossSectionBuilder	CrossSectionBuilder class: produces closed polygons based on the description in a given CrossSectionStyle.
CrossSectionStyle	CrossSectionStyle class encapsulates descriptors of the cross section of the ribon used for building SS.
Extrusion	Extrusion is the main building block for ribbon-like secondary structure representations
FrenetTrihedron	FrenetTrihedron encapsulates a LOCAL reference frame on a curve defined by the LOCAL tangent, normal and binormal vectors.
Geometry	This class provides the base functionality for geometry factory objects.
GeometryEntity	Geometry is the base class for the geometry description of all structure objects in a scene.
GlAxesRenderable	Draw X-Y-Z axes at the world origin (0.0, 0.0, 0.0).
GlExtrusion	Creates a geometry factory that uses JOGL/OpenGL to draw a generalized extrusion.
GlGeometryViewer	Define the GlGeometryViewer class.
GvPickEvent	GvPickEvent.java Please complete these missing tags
HelixGeometry	HelixGeometry is an SsGeometry container which, primarily, manages the geometry associated with an alpha-helix.
Hermite	The Hermite class contains capabilities for Hermite interpolation of points assumed to lie on curve.
Interpolator
IntrinsicCrossSection	IntrinsicCrossSection represents, geometrically, a closed poligon.
LabelGeometry	Construct a new object for generating bond geometry using default
MbtRenderable	Provides a renderable object which contains all properties needed to regenerate geometry for a visible representation of the data.
MonitorGeometry	Construct a new object for generating bond geometry using default
MonitorRenderable	Provides a renderable object which contains all properties needed to regenerate geometry for a visible representation of the data.
MoveEvent	GvPickEvent.java Please complete these missing tags
Priestle	Priestle encapsulates a procedure used to smooth the coordinates passed to one of the geometry classes.
Renderable	Provides a renderable object which contains all properties needed to regenerate geometry for a visible representation of some data.
ResidueLabelGeometry	Construct a new object for generating bond geometry using default
SsGeometry	SsGeometry is the base class for the geometry of all Secondary Structure objects.
StrandGeometry	StrandGeometry is an SsGeometry container which, primarily, manages the geometry associated with a strand.
TransformGroupRenderable	Provides a renderable object which contains all properties needed to regenerate geometry for a visible representation of some data.
Trihedron	Holds a moving trihedron normalized three-tuple of vectors that represents the basis vectors that define a coordinate system.
VirtualSphere2	Implements a Virtual Sphere algorithm for 3D rotation using a 2D input device.

Exception Summary

FragmentTooShortException

FragmentTooShortException is used to signal a condition in which a geometry representation of a secondary structure element can not be generated due to a too small number of coordinates.