edu.sdsc.mbt.viewers.GLViewerImpl
Class CoilGeometry

java.lang.Object
  edu.sdsc.mbt.viewers.GLViewerImpl.GeometryEntity
      edu.sdsc.mbt.viewers.GLViewerImpl.SsGeometry
          edu.sdsc.mbt.viewers.GLViewerImpl.CoilGeometry

public class CoilGeometry

extends SsGeometry

CoilGeometry is a SsGeometry container that, primarily, manages the geometry of a random coil. The ribon passes through "smoothed" CA coordinates, unless it is a turn in which smoothing may be off. the position of CA atoms. Interpolation and smoothing is also applied. This is also used to render turns in which case no smoothing is applied. As with all GeometryEntity objects, it can have other Geometry children.

Author:

Apostol Gramada

Field Summary

static float[]

shininessTemp

Fields inherited from class edu.sdsc.mbt.viewers.GLViewerImpl.SsGeometry

colorCache, colorReference

Constructor Summary

CoilGeometry()
Constructs a CoilGeometry objects with default values for the number of facets, segments, and cross section style.

Method Summary

void	drawFigure(javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut, CrossSectionStyle style, Vector3f[] coordinates, FrenetTrihedron[] triheds, java.awt.Color[] colorMap, boolean[] visMap, boolean[] residueMap, int pointCount)
void	drawJoglGeometry(javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Return the BranchGroup object representing the geometrical shape contained by this GeometryEntity object.
void	setDiameter(float diam) Sets the coil diameter.
void	setFacetCount(int facets) Sets facets count.
void	setNormals(Vector3f[] normals) Sets the normals along the spine.

Methods inherited from class edu.sdsc.mbt.viewers.GLViewerImpl.SsGeometry

drawSs, drawSs, drawSs, drawSs, getClosestResidueIndex, getColorMap, getHighlightState, getNextSs, getNextToFirstCa, getNextToFirstCaCoord, getPreviousSs, getPreviousToLastCa, getPreviousToLastCaCoord, getPriestleSteps, getUserData, getVisibilityMap, highlight, highlightClosestResidue, highlightResidue, highlightResidueRegion, isLeftExtended, isRightExtended, resetColor, resetGeometryColor, resetRibbonColor, setColorMap, setCoordinates, setCoordinates, setCrossSectionStyle, setCrossSectionType, setLeftExtended, setNextCaCoord, setNextCaCoord, setNextSs, setPreviousCaCoord, setPreviousCaCoord, setPreviousSs, setPriestleSteps, setRightExtended, setRoundedShape, setSegmentCount, setUserData, setVisibilityMap

Methods inherited from class edu.sdsc.mbt.viewers.GLViewerImpl.GeometryEntity

getQuality, setQuality

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

shininessTemp

public static final float[] shininessTemp

Constructor Detail

CoilGeometry

public CoilGeometry()

Constructs a CoilGeometry objects with default values for the number of facets, segments, and cross section style.

Method Detail

drawJoglGeometry

public void drawJoglGeometry(javax.media.opengl.GL gl,
                             javax.media.opengl.glu.GLU glu,
                             com.sun.opengl.util.GLUT glut)

Description copied from class: GeometryEntity

Return the BranchGroup object representing the geometrical shape contained by this GeometryEntity object. To be actually overridden in each subclass.

Overrides:

drawJoglGeometry in class GeometryEntity

drawFigure

public void drawFigure(javax.media.opengl.GL gl,
                       javax.media.opengl.glu.GLU glu,
                       com.sun.opengl.util.GLUT glut,
                       CrossSectionStyle style,
                       Vector3f[] coordinates,
                       FrenetTrihedron[] triheds,
                       java.awt.Color[] colorMap,
                       boolean[] visMap,
                       boolean[] residueMap,
                       int pointCount)

setNormals

public void setNormals(Vector3f[] normals)

Sets the normals along the spine.

setDiameter

public void setDiameter(float diam)

Sets the coil diameter.

setFacetCount

public void setFacetCount(int facets)

Sets facets count.