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AboutDialog AffineCrossSection Algebra AlignmentService AlignmentSettings AlignmentSettingsDialog AlnEntryLoader AminoAcidInfo AminoColorScheme AngleDialog AngleMonitorDialog AnnotationComponent AnnotationComponentRegistry AnnotationGeometry AppletLauncher3D ArrowComponent ArrowGeometry Atom Atom AtomColor AtomColorByCharge AtomColorByElement AtomColorFactory AtomColorRegistry AtomColorUniform AtomDialog AtomFilter AtomGeometry AtomLabel AtomLabelByAtomCompound AtomLabelByAtomElement AtomLabelByAtomName AtomLabelByChainId AtomLabelNone AtomLabelRegistry AtomLineGeometry AtomRadius AtomRadiusByConstant AtomRadiusByCpk AtomRadiusByScaledCpk AtomRadiusRegistry AtomRenameDialog AtomStats BackboneLine BlastLineData BlastResultPanel BlastSettings Bond BondColor BondColorByAtomColor BondColorByElement BondColorRegistry BondFactory BondForm BondFormOrder BondFormRegistry BondFormSimple BondFormSplit BondGeometry BondGeometryUtils BondInfo BondLabel BondLabelByDistance BondLabelNone BondLabelRegistry BondOrderDialog BondRadius BondRadiusAsStick BondRadiusAsWire BondRadiusByAtomRadius BondRadiusByScaledAtomRadius BondRadiusRegistry BreakBondDialog BrowserControl BrowserLauncher BuilderDialog BuilderPanel BumpDialog CAlphaAtomFilter Cell CenterDialog Chain Chain ChainColor ChainColorById ChainColorRegistry ChainGeometry ChargeDialog CodonInfo Coil CoilGeometry Color3f ColorDialog ColorEvent ColorManager ColorMap ColorScheme ColorTable ColumnData CommandPanel ComponentColorDialog ComponentRenderingDialog ComponentRibbonDialog Conformation ConservationColorMap Coordinate CpkColorScheme CreateBondDialog CreateSequenceDialog CrossSectionBuilder CrossSectionStyle CustomFragmentPanel DNAProperties DataBlock DataListerDialog DataService DataSet DataWBListerDialog Debug DeletionInfo DerivedInformation DialogConstants DialogLayout DihedralDialog DisplayDialog DisplayDialogEvent DisplayDialogListener DisplayParameters DistanceDialog DistributionViewer DoubleRange Element ElementPreferences ElementProperties ElementSelectionDialog ElementSelectionPanel ElementSettable ElementStylesDialog ElementStylesEditor Entry EntryFactory EntryListerDialog EntryLoader ExtensionLayout Extrusion Factory FastaEntryLoader FileCloseListener FileEntryLoader FileLoader FileNameFilter FilePdbWrapper FileTransfer Filter FilterAtom FilterAtomAll FilterAtomByChain FilterAtomByName FilterAtomByType FilterCaByResNum FilterCaByResNumAndCh FilterResidue FilterResidueByName FogDialog Fragment FragmentButton FragmentColor FragmentColorByType FragmentColorRegistry FragmentEntry FragmentForm FragmentFormCartoon FragmentFormCylinder FragmentFormLadder FragmentFormRegistry FragmentFormRibbon FragmentFormTube FragmentFormWireframe FragmentGroupPanel FragmentLoader FragmentRecord FragmentRegistry FragmentTooShortException FragmentUtil FrameRegistry FrenetTrihedron GeneralFragmentPanel Geometry GeometryEntity GeometryEvent GlAxesRenderable GlExtrusion GlGeometryViewer GlRenderable GvPickEvent GvPickEventListener HBDialog Helix HelixGeometry Hermite HybridizationDialog HydrogenBondComponent HydrogenDialog HydrogenEvent IOHandler ImageExportDialog ImageFileChooser ImageHandler ImagePreviewPanel ImageUtils InfoViewer IntRange InterProDataBlock InterpolatedColorMap Interpolator IntrinsicCrossSection JFontChooser JFontPreviewPanel LabelComponent LabelDialog LabelEvent LabelGeometry LimitedLengthDocument LineData ListerDialog Loader Location LogicalGroup MalformedPathException Manager MbtRenderable MessageDialog MetaData Model Mol2EntryLoader MonitorComponent MonitorDialog MonitorGeometry MonitorPanel MonitorRenderable MotifDialog MotionDialog MoveEvent MoveEventListener MsfEntryLoader NucleicAcidInfo Octree OctreeAtomItem OctreeDataItem PagePrintable Path Pdb PdbDialog PdbEntryLoader PdbLoadDialog PdbWrapper PeriodicTable PickUtils Point3f PreferencesCache PreferencesDialog Priestle ProgressPanel ProteinFragmentPanel ProteinProperties PubmedLineData PubmedResultPanel Quat4f RamachandranViewer RamachandranViewerDialog Range RangeMap RasmolReader RayTraceUtil RayTracerDialog RelationFilter Relation_Conformation_Atom Renderable RenderingDialog RenderingEvent ReplaceAtomDialog ReplaceResidueDialog Residue Residue ResidueAnnotation ResidueColor ResidueColorByCharge ResidueColorByElement ResidueColorByHydrophobicity ResidueColorByType ResidueColorDefault ResidueColorFactory ResidueColorRegistry ResidueColorScaled ResidueColorUniform ResidueLabelComponent ResidueLabelDialog ResidueLabelGeometry ResidueRenameDialog ResultPanel ResultPanelCallable ResultPanelFrame ResultTable RibbonColor RibbonColorDefault RibbonColorDialog RibbonColorEvent RibbonColorFactory RibbonColorUniform RibbonDialog RibbonEvent RotateBondDialog SDFEntryLoader SaveFragmentDialog SelectListDialog Selection SelectionAreaDialog SelectionOfAtoms SelectionOfResidues Sequence SequenceComparator SequenceEntry SequencePanel SequenceRenameDialog SequenceScalePanel SequenceStyles SequenceStylesEvent SequenceStylesEventListener SequenceViewer Settable Settings SideChain SimpleInternalFrame SiriusAppletLauncher SplashWindow SsGeometry StateHandler StateObject Status StatusEvent StatusListener StatusPanel StericBumpComponent StericEvent Strain Strand StrandGeometry StringLib StringUtils Structure StructureAlignmentDialog StructureBrowser StructureColorScheme StructureComponent StructureComponentEvent StructureComponentEventListener StructureComponentFilter StructureComponentIterator StructureComponentRegistry StructureComponentRelation StructureDocument StructureDocumentEvent StructureEditDialog StructureEntry StructureEvent StructureEventRegistry StructureInfo StructureItem StructureMap StructureMath StructureRenameDialog StructureSelectionDialog StructureSetDialog StructureStyles StructureStylesEvent StructureStylesEventListener StructureSuperpositionAlignDialog StructureViewer StyleManager StyleMap StylesPreferences SuperimposeDialog Symmetry TabListCellRenderer TableViewPanel TileRenderer TransformGroupRenderable Trihedron Turn UIFSplitPane UrlLoader UrlPdbWrapper Vec3d Vec3f Vector3f VectorSet ViewEvent Viewer Viewer ViewerParameters VirtualSphere2 VisibilityDialog VisibilityEvent WBEntry WBListDialog WBListPanel WBManager WBSaveDialog WeightDialog WeightEvent