edu.sdsc.mbt.util
Class ElementProperties

java.lang.Object
  edu.sdsc.mbt.util.ElementProperties

public class ElementProperties

extends java.lang.Object

Field Summary

static int	LINEAR
static int	OCTAHEDRAL
static int	TETRAHEDRAL
static int	TRIGONAL
static int	TRIGONAL_BIPYRAMIDAL

Constructor Summary

ElementProperties()

Method Summary

static double	getAtomRadius(int number) Get the radius of the given element number.
static double	getAtomRadius(short index)
static double	getAtomRadius(java.lang.String name) Get the radius of the given element name.
static VectorSet	getBondGeometry(Atom atom)
static double	getBondLength(int e1, int e2)
static double	getBondLength(short e1, short e2)
static float[]	getElementColor(int number) Get the RGB color of the given element number.
static float[]	getElementColor(java.lang.String name) Get the RGB color of the given element name.
static int	getElementCount() Get the number of elements for which style information is represented by this class.
static int[]	getElementValency(int number)
static int[]	getElementValency(short index)
static int[]	getElementValency(java.lang.String symbol)
static double	getIonRadius(int number)
static void	setAtomRadius(int number, double radius) Set the radius of the given element number.
static void	setAtomRadius(java.lang.String name, double radius) Set the radius of the given element name.
static void	setDefaultElementColors() Sets element colors to their default values
static void	setElementColor(int number, float r, float g, float b) Set the RGB color of the given element number.
static void	setElementColor(java.lang.String name, float r, float g, float b) Set the RGB color of the given element name.
static void	setIonRadius(int number, double radius)
static void	setIonRadius(java.lang.String name, double radius)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

LINEAR

public static final int LINEAR

See Also:

Constant Field Values

TRIGONAL

public static final int TRIGONAL

See Also:

Constant Field Values

TETRAHEDRAL

public static final int TETRAHEDRAL

See Also:

Constant Field Values

TRIGONAL_BIPYRAMIDAL

public static final int TRIGONAL_BIPYRAMIDAL

See Also:

Constant Field Values

OCTAHEDRAL

public static final int OCTAHEDRAL

See Also:

Constant Field Values

Constructor Detail

ElementProperties

public ElementProperties()

Method Detail

getElementCount

public static int getElementCount()

Get the number of elements for which style information is represented by this class.

getBondLength

public static double getBondLength(int e1,
                                   int e2)

getBondLength

public static double getBondLength(short e1,
                                   short e2)

setElementColor

public static void setElementColor(int number,
                                   float r,
                                   float g,
                                   float b)

Set the RGB color of the given element number. Color components are clamped between 0.0 and 1.0.

setElementColor

public static void setElementColor(java.lang.String name,
                                   float r,
                                   float g,
                                   float b)

Set the RGB color of the given element name. Color components are clamped between 0.0 and 1.0.

getElementColor

public static float[] getElementColor(int number)

Get the RGB color of the given element number. Color components are clamped between 0.0 and 1.0.

getElementColor

public static float[] getElementColor(java.lang.String name)

Get the RGB color of the given element name. Color components are clamped between 0.0 and 1.0.

setAtomRadius

public static void setAtomRadius(int number,
                                 double radius)

Set the radius of the given element number. Radius values are constrained to be non-negative.

setAtomRadius

public static void setAtomRadius(java.lang.String name,
                                 double radius)

Set the radius of the given element name. Radius values are constrained to be non-negative.

getAtomRadius

public static double getAtomRadius(int number)

Get the radius of the given element number. Radius values are constrained to be non-negative.

getIonRadius

public static double getIonRadius(int number)

setIonRadius

public static void setIonRadius(java.lang.String name,
                                double radius)

setIonRadius

public static void setIonRadius(int number,
                                double radius)

getAtomRadius

public static double getAtomRadius(java.lang.String name)

Get the radius of the given element name. Radius values are constrained to be non-negative.

getAtomRadius

public static double getAtomRadius(short index)

setDefaultElementColors

public static void setDefaultElementColors()

Sets element colors to their default values

getElementValency

public static int[] getElementValency(int number)

getElementValency

public static int[] getElementValency(java.lang.String symbol)

getElementValency

public static int[] getElementValency(short index)

getBondGeometry

public static VectorSet getBondGeometry(Atom atom)