Constant Field Values

Contents

• com.jgoodies.*
• edu.sdsc.*

com.jgoodies.*

com.jgoodies.uif_lite.component.UIFSplitPane

public static final java.lang.String

PROPERTYNAME_DIVIDER_BORDER_VISIBLE

"dividerBorderVisible"

edu.sdsc.*

edu.sdsc.mbt.AnnotationComponentRegistry

public static final int	TYPE_ANGLE_MONITOR	6
public static final int	TYPE_ARROW	2
public static final int	TYPE_DIHEDRAL_ANGLE_MONITOR	7
public static final int	TYPE_HYDROGEN_BOND	1
public static final int	TYPE_LABEL	4
public static final int	TYPE_MONITOR	3
public static final int	TYPE_RESIDUE_LABEL	5
public static final int	TYPE_STERIC_BUMP	0

edu.sdsc.mbt.Bond

public static final java.lang.String	TYPE_COVALENT	"Covalent"
public static final java.lang.String	TYPE_HYDROGEN	"Hydrogen"
public static final java.lang.String	TYPE_IONIC	"Ionic"

edu.sdsc.mbt.Conformation

public static final java.lang.String

TYPE_UNDEFINED

"UNDEFINED_CONFORMATION"

edu.sdsc.mbt.Residue

public static final java.lang.String	COMPOUND_AMINO_ACID	"Amino Acid"
public static final java.lang.String	COMPOUND_DELETION	"Deletion"
public static final java.lang.String	COMPOUND_LIGAND	"Ligand"
public static final java.lang.String	COMPOUND_NUCLEIC_ACID	"Nucleic Acid"

edu.sdsc.mbt.StructureComponentEvent

public static final int	ATTRIBUTE_DATA	2
public static final int	ATTRIBUTE_PROPERTY	0
public static final int	ATTRIBUTE_STRUCTURE	1
public static final int	EXTENT_GLOBAL	1
public static final int	EXTENT_LOCAL	0
public static final int	EXTENT_RECURSIVE	2
public static final int	TYPE_ADD	0
public static final int	TYPE_GEOMETRY_CHANGE	6
public static final int	TYPE_MODIFY	2
public static final int	TYPE_RELOAD_CONTENT	3
public static final int	TYPE_REMOVE	1
public static final int	TYPE_REPLACE	4
public static final int	TYPE_UNDO_REPLACE	5

edu.sdsc.mbt.util.Algebra

public static final int	X_AXIS	0
public static final int	Y_AXIS	1
public static final int	Z_AXIS	2

edu.sdsc.mbt.util.Element

public static final int	Ag	47
public static final int	Al	13
public static final int	Ar	18
public static final int	As	33
public static final int	Au	79
public static final int	B	5
public static final int	Be	4
public static final int	Br	35
public static final int	C	6
public static final int	Ca	20
public static final int	Cd	48
public static final int	Cl	17
public static final int	Cu	29
public static final int	F	9
public static final int	Ga	31
public static final int	H	1
public static final int	He	2
public static final int	Hg	80
public static final int	I	53
public static final int	In	49
public static final int	K	19
public static final int	Kr	36
public static final int	Li	3
public static final int	Mg	12
public static final int	N	7
public static final int	Na	11
public static final int	Ne	10
public static final int	Ni	28
public static final int	O	8
public static final int	P	15
public static final int	Pb	82
public static final int	Pd	46
public static final int	Pt	78
public static final int	S	16
public static final int	Se	34
public static final int	Si	14
public static final int	Sn	50
public static final int	Te	52
public static final int	Tl	81
public static final int	U	92
public static final int	Xe	54
public static final int	Zn	30

edu.sdsc.mbt.util.ElementProperties

public static final int	LINEAR	0
public static final int	OCTAHEDRAL	4
public static final int	TETRAHEDRAL	2
public static final int	TRIGONAL	1
public static final int	TRIGONAL_BIPYRAMIDAL	3

edu.sdsc.mbt.util.FrameRegistry

public static final int	SEQUENCE_VIEWER	1
public static final int	STRUCTURE_VIEWER	0
public static final int	TREE_VIEWER	2

edu.sdsc.mbt.util.PickUtils

public static final int	PICK_ATOMS	1
public static final int	PICK_AUTO	0
public static final int	PICK_CHAINS	4
public static final int	PICK_FRAGMENTS	3
public static final int	PICK_MOLECULES	5
public static final int	PICK_RESIDUES	2

edu.sdsc.mbt.util.Status

public static final int	LEVEL_DEBUG	4
public static final int	LEVEL_DUMP	5
public static final int	LEVEL_ERROR	1
public static final int	LEVEL_QUIET	0
public static final int	LEVEL_REMARK	3
public static final int	LEVEL_WARNING	2

edu.sdsc.mbt.util.StatusEvent

public static final int	TYPE_OUTPUT	0
public static final int	TYPE_PROGRESS	1

edu.sdsc.mbt.viewables.AtomColorByCharge

public static final java.lang.String

NAME

"Color Atom By Charge"

edu.sdsc.mbt.viewables.AtomColorByElement

public static final java.lang.String

NAME

"By Element"

edu.sdsc.mbt.viewables.AtomColorUniform

public static final java.lang.String

NAME

"Color Atom Uniform"

edu.sdsc.mbt.viewables.AtomLabelByAtomCompound

public static final java.lang.String

NAME

"By Atom Compound"

edu.sdsc.mbt.viewables.AtomLabelByAtomElement

public static final java.lang.String

NAME

"By Atom Element"

edu.sdsc.mbt.viewables.AtomLabelByAtomName

public static final java.lang.String

NAME

"By Atom Name"

edu.sdsc.mbt.viewables.AtomLabelByChainId

public static final java.lang.String

NAME

"By Atom Chain ID"

edu.sdsc.mbt.viewables.AtomLabelNone

public static final java.lang.String

NAME

"None"

edu.sdsc.mbt.viewables.AtomRadiusByConstant

public static final java.lang.String

NAME

"By Constant (Smooth Bonds)"

edu.sdsc.mbt.viewables.AtomRadiusByCpk

public static final java.lang.String

NAME

"By CPK"

edu.sdsc.mbt.viewables.AtomRadiusByScaledCpk

public static final java.lang.String

NAME

"By Scaled CPK"

edu.sdsc.mbt.viewables.BondColorByAtomColor

public static final java.lang.String

NAME

"By Atom Color"

edu.sdsc.mbt.viewables.BondColorByElement

public static final java.lang.String

NAME

"By Atom Elements"

edu.sdsc.mbt.viewables.BondForm

public static final int	ORDER	2
public static final int	SIMPLE	0
public static final int	SPLIT	1

edu.sdsc.mbt.viewables.BondFormOrder

public static final java.lang.String

NAME

"Order"

edu.sdsc.mbt.viewables.BondFormSimple

public static final java.lang.String

NAME

"Simple"

edu.sdsc.mbt.viewables.BondFormSplit

public static final java.lang.String

NAME

"Split"

edu.sdsc.mbt.viewables.BondLabelByDistance

public static final java.lang.String

NAME

"By Atom Distance"

edu.sdsc.mbt.viewables.BondLabelNone

public static final java.lang.String

NAME

"None"

edu.sdsc.mbt.viewables.BondRadiusAsStick

public static final java.lang.String

NAME

"As Stick"

edu.sdsc.mbt.viewables.BondRadiusAsWire

public static final java.lang.String

NAME

"As Wireframe"

edu.sdsc.mbt.viewables.BondRadiusByAtomRadius

public static final java.lang.String

NAME

"By Atom Radius (Smooth Bonds)"

edu.sdsc.mbt.viewables.BondRadiusByScaledAtomRadius

public static final java.lang.String

NAME

"By Scaled Atom Radius (Ball-And-Stick)"

edu.sdsc.mbt.viewables.ChainColorById

public static final java.lang.String

NAME

"By ID"

edu.sdsc.mbt.viewables.FragmentColorByType

public static final java.lang.String

NAME

"By Conformation Type"

edu.sdsc.mbt.viewables.FragmentFormCartoon

public static final java.lang.String

NAME

"Cartoon"

edu.sdsc.mbt.viewables.FragmentFormCylinder

public static final java.lang.String

NAME

"Cylinder"

edu.sdsc.mbt.viewables.FragmentFormLadder

public static final java.lang.String

NAME

"Ladder (RNA/DNA)"

edu.sdsc.mbt.viewables.FragmentFormRibbon

public static final java.lang.String

NAME

"Ribbon"

edu.sdsc.mbt.viewables.FragmentFormTube

public static final java.lang.String

NAME

"Tube"

edu.sdsc.mbt.viewables.FragmentFormWireframe

public static final java.lang.String

NAME

"Wireframe"

edu.sdsc.mbt.viewables.InterpolatedColorMap

public static final int	BLACK_TO_WHITE	0
public static final int	COLD_TO_HOT	2
public static final int	RAINBOW	1

edu.sdsc.mbt.viewables.ResidueColorByCharge

public static final java.lang.String

NAME

"Color Residue By Charge"

edu.sdsc.mbt.viewables.ResidueColorByElement

public static final java.lang.String

NAME

"Color Residue Uniform"

edu.sdsc.mbt.viewables.ResidueColorByHydrophobicity

public static final java.lang.String

NAME

"Color Residue By Hydrophobicity"

edu.sdsc.mbt.viewables.ResidueColorByType

public static final java.lang.String

NAME

"Color Residue By Type"

edu.sdsc.mbt.viewables.ResidueColorDefault

public static final java.lang.String

NAME

"Color Residue Default"

edu.sdsc.mbt.viewables.ResidueColorScaled

public static final java.lang.String

NAME

"Color Residue Scaled"

edu.sdsc.mbt.viewables.ResidueColorUniform

public static final java.lang.String

NAME

"Color Residue Uniform"

edu.sdsc.mbt.viewables.RibbonColorDefault

public static final java.lang.String

NAME

"Color Ribbon Default"

edu.sdsc.mbt.viewables.RibbonColorUniform

public static final java.lang.String

NAME

"Color Ribbon Uniform"

edu.sdsc.mbt.viewables.StructureDocumentEvent

public static final int	CHANGE_ADDED	0
public static final int	CHANGE_RELOAD	3
public static final int	CHANGE_REMOVED	1
public static final int	CHANGE_RENAMED	2
public static final int	TYPE_DATA	1
public static final int	TYPE_GLOBAL	2
public static final int	TYPE_VIEWER	0

edu.sdsc.mbt.viewables.StructureStyles

public static final int	ATTRIBUTE_QUALITY	5
public static final int	ATTRIBUTE_RIBBON_VISIBILITY	3
public static final int	ATTRIBUTE_SELECTION	4
public static final int	ATTRIBUTE_STYLE	1
public static final int	ATTRIBUTE_VISIBILITY	2
public static final int	FLAG_ALL	2
public static final int	FLAG_NONE	0
public static final int	FLAG_SOME	1
public static final int	PROPERTY_COLOR	0
public static final int	PROPERTY_RADIUS	1
public static final int	PROPERTY_RENDERING	2
public static final int	PROPERTY_RIBBON_COLOR	3
public static final int	PROPERTY_RIBBON_VISIBILITY	4

edu.sdsc.mbt.viewables.StylesPreferences

public static final int	ATOMIC_RADIUS	0
public static final int	defaultLAF	0
public static final int	MAGNIFICATION_MOVE	0
public static final int	MAGNIFICATION_ZOOM	1
public static final int	NATIVE_LAF	1
public static final int	POSITION_LEFT	0
public static final int	POSITION_TOP	1
public static final short	RENDERING_BALL_STICK	2
public static final short	RENDERING_BEST	1
public static final short	RENDERING_CPK	3
public static final short	RENDERING_FAST	0
public static final short	RENDERING_LINES	0
public static final short	RENDERING_RIBBON	4
public static final short	RENDERING_STICK	1
public static final int	RIBBON_CYLINDER_HELICES	2
public static final int	RIBBON_FLAT_HELICES	4
public static final int	RIBBON_LINE	0
public static final int	RIBBON_RENDERED	1
public static final int	RIBBON_UNIFORM_ROUND	3
public static final int	SELECTION_ATOM	0
public static final int	SELECTION_FRAGMENT	2
public static final int	SELECTION_RESIDUE	1
public static final int	SELECTION_STRUCTURE	3
public static final int	SMOOTH_LAF	0
public static final int	SURFACE_DOT	0
public static final int	SURFACE_MESH	1
public static final int	SURFACE_QUALITY_HIGH	2
public static final int	SURFACE_QUALITY_LOW	0
public static final int	SURFACE_QUALITY_MEDIUM	1
public static final int	SURFACE_QUALITY_ULTRA	3
public static final int	SURFACE_SOLID	2
public static final int	UNIFORM_RADIUS	1

edu.sdsc.mbt.viewers.GLViewerImpl.Geometry

public static final int	FORM_FLAT	2
public static final int	FORM_LINES	1
public static final int	FORM_POINTS	0
public static final int	FORM_THICK	3

edu.sdsc.mbt.viewers.GLViewerImpl.Interpolator

public static final int	COSINE	1
public static final int	CUBIC	2
public static final int	HERMITE	3
public static final int	LINEAR	0

edu.sdsc.mbt.viewers.GLViewerImpl.LabelGeometry

public static final int	LARGE_FONT	8
public static final int	MEDIUM_FONT	7
public static final int	SMALL_FONT	6

edu.sdsc.mbt.viewers.GLViewerImpl.MoveEvent

public static final int	TYPE_BOND_ROTATION	0
public static final int	TYPE_INDEPENDENT_MOTION	1

edu.sdsc.sirius.dialogs.BumpDialog

public static final int	INTERSET	1
public static final int	INTRASET	0

edu.sdsc.sirius.dialogs.ColorDialog

public static final int	COLOR_BY_CHAIN	1
public static final int	COLOR_BY_CHARGE	2
public static final int	COLOR_BY_ELEMENT	0
public static final int	COLOR_CUSTOM	3

edu.sdsc.sirius.dialogs.ComponentColorDialog

public static final int	COLOR_BY_CHAIN	1
public static final int	COLOR_BY_CHARGE	2
public static final int	COLOR_BY_ELEMENT	0
public static final int	COLOR_CUSTOM	3

edu.sdsc.sirius.dialogs.DialogConstants

public static final int	ADD_SELECTION	0
public static final int	APPLY_ALL	5
public static final int	APPLY_ATOM	4
public static final int	APPLY_CHAIN	2
public static final int	APPLY_RESIDUE	3
public static final int	APPLY_SELECTION	0
public static final int	APPLY_STRUCTURE	1
public static final int	APPLY_VISIBLE	6
public static final int	REFERENCE_COMMON	2
public static final int	REFERENCE_DEFINED	1
public static final int	REFERENCE_SELECTED	0
public static final int	REPLACE_SELECTION	1
public static final int	SELECTED_IGNORE	0
public static final int	SELECTED_OMIT	2
public static final int	SELECTED_USE	1
public static final int	USE_DEFINED	1
public static final int	USE_LOADED	0

edu.sdsc.sirius.dialogs.EntryListerDialog

public static final int	CLOSE_ENTRY	1
public static final int	LOAD_STRUCTURE	2
public static final int	SAVE_ENTRY	0

edu.sdsc.sirius.dialogs.HBDialog

public static final int	INTERSET	1
public static final int	INTRASET	0

edu.sdsc.sirius.dialogs.HydrogenDialog

public static final int	PH_CUSTOM	1
public static final int	PH_NEUTRAL	0

edu.sdsc.sirius.dialogs.JFontChooser

public static final int	ACCEPT_OPTION	2
public static final int	CANCEL_OPTION	4
public static final int	ERROR_OPTION	0

edu.sdsc.sirius.dialogs.LabelDialog

public static final int	TYPE_CHARGE	2
public static final int	TYPE_CUSTOM	4
public static final int	TYPE_ELEMENT	1
public static final int	TYPE_HYBRIDIZATION	3
public static final int	TYPE_NAME	0

edu.sdsc.sirius.dialogs.RibbonColorDialog

public static final int	COLOR_BY_CHAIN	1
public static final int	COLOR_BY_ELEMENT	0
public static final int	COLOR_CUSTOM	2

edu.sdsc.sirius.dialogs.StructureAlignmentDialog

public static final int	USE_ALL	0
public static final int	USE_SELECTION	1
public static final int	USE_SET	2

edu.sdsc.sirius.dialogs.StructureEditDialog

public static final int	DELETE	0
public static final int	EXTRACT	1
public static final int	MERGE	2

edu.sdsc.sirius.dialogs.StructureEventRegistry

public static final int	BREAK_BOND	1
public static final int	CREATE_BOND	0
public static final int	DELETE_ATOM	3
public static final int	REPLACE_ATOM	2
public static final int	ROTATE_BOND	4
public static final int	SELECT_ATOM	5

edu.sdsc.sirius.dialogs.VisibilityDialog

public static final int	TYPE_RIBBON	1
public static final int	TYPE_STRUCTURE	0
public static final int	VIS_HIDE	2
public static final int	VIS_SHOW	0
public static final int	VIS_SHOW_ONLY	1

edu.sdsc.sirius.dialogs.TableImpl.ResultPanel

public static final int	NAVIGATION_TABLE	2
public static final int	PATTERN_TABLE	1
public static final int	SEARCH_TABLE	0

edu.sdsc.sirius.dialogs.TableImpl.TableViewPanel

public static final int	NAVIGATION_TABLE	2
public static final int	PATTERN_TABLE	1
public static final int	SEARCH_TABLE	0

edu.sdsc.sirius.io.Entry

public static final int	COMPOSITE_ENTRY	3
public static final int	DATA_SEQUENCE	1
public static final int	DATA_STRUCTURE	0
public static final int	FRAGMENT_ENTRY	1
public static final int	SEQUENCE_ENTRY	2
public static final int	STRUCTURE_ENTRY	0

edu.sdsc.sirius.ray.RayTraceUtil

public static final int

RENDER_TIMEOUT

300

edu.sdsc.sirius.viewers.SequenceViewer

public final int	buttonWidthCells	7
public static final int	ssHeight	5

edu.sdsc.sirius.viewers.SequenceViewerImpl.AlignmentSettings

public static final int	ALIGNMENT_CLUSTALW	0
public static final int	ALIGNMENT_MUSCLE	1
public static final int	ALIGNMENT_SERVER	3
public static final int	ALIGNMENT_TCOFFEE	2

edu.sdsc.sirius.viewers.SequenceViewerImpl.SequenceStyles

public static final int	ATTRIBUTE_NAME	3
public static final int	ATTRIBUTE_SELECTION	2
public static final int	ATTRIBUTE_STYLE	1
public static final int	PROPERTY_COLOR	0