edu.sdsc.mbt.util
Class CodonInfo

java.lang.Object
  edu.sdsc.mbt.util.CodonInfo

public class CodonInfo

extends java.lang.Object

Provides static information about mRNA Codons such nucleic acid tuple / amino acid code mapping.

Author:

John L. Moreland

See Also:

Residue, AminoAcidInfo,

Constructor Summary

CodonInfo()

Method Summary

static java.lang.String	getAminoAcidLetter(java.lang.String codon) Returns the amino acid letter code for the given 3-letter codon tuple.
static java.lang.String	getAminoAcidLetter(java.lang.String letter1, java.lang.String letter2, java.lang.String letter3) Returns the amino acid letter code for the given 3-letter codon tuple.
static int	getCodonCount() Returns the number of codon/amino-acid tuples in the database.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CodonInfo

public CodonInfo()

Method Detail

getCodonCount

public static int getCodonCount()

Returns the number of codon/amino-acid tuples in the database.

getAminoAcidLetter

public static java.lang.String getAminoAcidLetter(java.lang.String codon)

Returns the amino acid letter code for the given 3-letter codon tuple.

getAminoAcidLetter

public static java.lang.String getAminoAcidLetter(java.lang.String letter1,
                                                  java.lang.String letter2,
                                                  java.lang.String letter3)

Returns the amino acid letter code for the given 3-letter codon tuple.