edu.sdsc.mbt.viewers.GLViewerImpl
Class StrandGeometry

java.lang.Object
  edu.sdsc.mbt.viewers.GLViewerImpl.GeometryEntity
      edu.sdsc.mbt.viewers.GLViewerImpl.SsGeometry
          edu.sdsc.mbt.viewers.GLViewerImpl.StrandGeometry

public class StrandGeometry

extends SsGeometry

StrandGeometry is an SsGeometry container which, primarily, manages the geometry associated with a strand. It is a ribon-like shape that passes through "smoothed" CA atoms, and contains interpolated points. As with all GeometryEntity objects, it can have other GeometryEntity children.

Author:

Apostol Gramada

Field Summary

static float[]

shininessTemp

Fields inherited from class edu.sdsc.mbt.viewers.GLViewerImpl.SsGeometry

colorCache, colorReference

Constructor Summary

StrandGeometry()
Constructs a StrandGeometry objects with default values for the number of facets, segments, and cross section style.

Method Summary

void	drawFigure(javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut, CrossSectionStyle style, Vector3f[] arrowScale, Vector3f[] coordinates, FrenetTrihedron[] triheds, java.awt.Color[] colorMap, boolean[] visMap, boolean[] resMap, int pointCount) Returns the scene graph component associated with the Strand defined by the underlying data
void	drawJoglGeometry(javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Returns a Java3D object representing a strand and eventually any other GeometryEntity that this object contains as a child.
void	setDrawArrow(boolean drawArrow) Sets the tangents along the spine.
void	setNormals(Vector3f[] normals) Sets the normals along the spine.
void	setTangents(Vector3f[] tangents) Sets the tangents along the spine.

Methods inherited from class edu.sdsc.mbt.viewers.GLViewerImpl.SsGeometry

drawSs, drawSs, drawSs, drawSs, getClosestResidueIndex, getColorMap, getHighlightState, getNextSs, getNextToFirstCa, getNextToFirstCaCoord, getPreviousSs, getPreviousToLastCa, getPreviousToLastCaCoord, getPriestleSteps, getUserData, getVisibilityMap, highlight, highlightClosestResidue, highlightResidue, highlightResidueRegion, isLeftExtended, isRightExtended, resetColor, resetGeometryColor, resetRibbonColor, setColorMap, setCoordinates, setCoordinates, setCrossSectionStyle, setCrossSectionType, setLeftExtended, setNextCaCoord, setNextCaCoord, setNextSs, setPreviousCaCoord, setPreviousCaCoord, setPreviousSs, setPriestleSteps, setRightExtended, setRoundedShape, setSegmentCount, setUserData, setVisibilityMap

Methods inherited from class edu.sdsc.mbt.viewers.GLViewerImpl.GeometryEntity

getQuality, setQuality

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

shininessTemp

public static final float[] shininessTemp

Constructor Detail

StrandGeometry

public StrandGeometry()

Constructs a StrandGeometry objects with default values for the number of facets, segments, and cross section style.

Method Detail

drawJoglGeometry

public void drawJoglGeometry(javax.media.opengl.GL gl,
                             javax.media.opengl.glu.GLU glu,
                             com.sun.opengl.util.GLUT glut)

Returns a Java3D object representing a strand and eventually any other GeometryEntity that this object contains as a child.

Overrides:

drawJoglGeometry in class GeometryEntity

drawFigure

public void drawFigure(javax.media.opengl.GL gl,
                       javax.media.opengl.glu.GLU glu,
                       com.sun.opengl.util.GLUT glut,
                       CrossSectionStyle style,
                       Vector3f[] arrowScale,
                       Vector3f[] coordinates,
                       FrenetTrihedron[] triheds,
                       java.awt.Color[] colorMap,
                       boolean[] visMap,
                       boolean[] resMap,
                       int pointCount)

Returns the scene graph component associated with the Strand defined by the underlying data

setNormals

public void setNormals(Vector3f[] normals)

Sets the normals along the spine.

setTangents

public void setTangents(Vector3f[] tangents)

Sets the tangents along the spine.

setDrawArrow

public void setDrawArrow(boolean drawArrow)

Sets the tangents along the spine.