edu.sdsc.sirius.viewers.SequenceViewerImpl
Class StyleManager

java.lang.Object
  edu.sdsc.sirius.viewers.SequenceViewerImpl.StyleManager

public class StyleManager

extends java.lang.Object

Field Summary

static int	CHAIN_COLOR
static int	CONSERVATION_COLOR
static int	HYDROPHOBIC_COLOR
static int	SOLID_COLOR
static int	TYPE_COLOR

Constructor Summary

StyleManager(SequenceViewer viewer)

Method Summary

java.awt.Color	getColor(java.awt.Color reference) This method takes a color required by the application, e.g.
java.awt.Color	getColor(float[] reference)
static java.awt.Color	getConservationColor(double value)
java.awt.Color	getDefaultColor()
static java.awt.Color	getHydrophobicityColor(java.lang.String symbol)
static java.awt.Color	getTypeColor(java.lang.String symbol)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SOLID_COLOR

public static int SOLID_COLOR

TYPE_COLOR

public static int TYPE_COLOR

HYDROPHOBIC_COLOR

public static int HYDROPHOBIC_COLOR

CONSERVATION_COLOR

public static int CONSERVATION_COLOR

CHAIN_COLOR

public static int CHAIN_COLOR

Constructor Detail

StyleManager

public StyleManager(SequenceViewer viewer)

Method Detail

getColor

public java.awt.Color getColor(java.awt.Color reference)

This method takes a color required by the application, e.g. color of an object passed from the structure viewer, and creates a local instance if a new one is necessary. Otherwise, it assigns a reference to an existing object.

Parameters:

reference -

Returns:

getColor

public java.awt.Color getColor(float[] reference)

getDefaultColor

public java.awt.Color getDefaultColor()

getTypeColor

public static java.awt.Color getTypeColor(java.lang.String symbol)

getConservationColor

public static java.awt.Color getConservationColor(double value)

getHydrophobicityColor

public static java.awt.Color getHydrophobicityColor(java.lang.String symbol)