edu.sdsc.sirius.export
Class StateObject

java.lang.Object
  edu.sdsc.sirius.export.StateObject

All Implemented Interfaces:

java.io.Serializable

public class StateObject

extends java.lang.Object

implements java.io.Serializable

This is a wrapper class to export the current state of the structure viewer

Author:

Oleksandr V. Buzko

See Also:

Serialized Form

Constructor Summary

StateObject(java.util.Vector coordinates, java.util.Vector sequences, java.util.Vector styles, ViewerParameters view, float[][][] cellColors, java.util.Vector atomSetNames)

Method Summary

java.util.Vector	getAtomSetNames()
int[][]	getBumps()
float[][][]	getCellColors()
int[][]	getDistanceMonitors()
int[][]	getHBonds()
int[]	getIndependentAtoms()
int[]	getIndependentResidues()
int	getIndependentStructureIndex()
int[]	getRamaViewers()
java.util.Vector	getSequences()
java.util.Vector	getStructures()
java.util.Vector	getStyleMap()
ViewerParameters	getView()
boolean	isTrackBumps()
void	setAtomSetNames(java.util.Vector atomSetNames)
void	setBumps(int[][] bumps)
void	setCellColors(float[][][] cellColors)
void	setDistanceMonitors(int[][] distanceMonitors)
void	setHBonds(int[][] bonds)
void	setIndependentAtoms(int[] independentAtoms)
void	setIndependentResidues(int[] independentResidues)
void	setIndependentStructureIndex(int independentStructureIndex)
void	setRamaViewers(int[] ramaViewers)
void	setSequences(java.util.Vector sequences)
void	setStructures(java.util.Vector structures)
void	setStyleMap(java.util.Vector styleMap)
void	setTrackBumps(boolean trackBumps)
void	setView(ViewerParameters view)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

StateObject

public StateObject(java.util.Vector coordinates,
                   java.util.Vector sequences,
                   java.util.Vector styles,
                   ViewerParameters view,
                   float[][][] cellColors,
                   java.util.Vector atomSetNames)

Method Detail

getStructures

public final java.util.Vector getStructures()

Returns:

Returns the structures.

setStructures

public final void setStructures(java.util.Vector structures)

Parameters:

structures - The structures to set.

getView

public final ViewerParameters getView()

Returns:

Returns the view.

setView

public final void setView(ViewerParameters view)

Parameters:

view - The view to set.

getCellColors

public final float[][][] getCellColors()

setCellColors

public final void setCellColors(float[][][] cellColors)

getStyleMap

public final java.util.Vector getStyleMap()

Returns:

Returns the styleMap.

setStyleMap

public final void setStyleMap(java.util.Vector styleMap)

Parameters:

styleMap - The styleMap to set.

getSequences

public final java.util.Vector getSequences()

setSequences

public final void setSequences(java.util.Vector sequences)

getAtomSetNames

public final java.util.Vector getAtomSetNames()

setAtomSetNames

public final void setAtomSetNames(java.util.Vector atomSetNames)

getIndependentAtoms

public final int[] getIndependentAtoms()

setIndependentAtoms

public final void setIndependentAtoms(int[] independentAtoms)

getIndependentResidues

public final int[] getIndependentResidues()

setIndependentResidues

public final void setIndependentResidues(int[] independentResidues)

getIndependentStructureIndex

public final int getIndependentStructureIndex()

setIndependentStructureIndex

public final void setIndependentStructureIndex(int independentStructureIndex)

isTrackBumps

public final boolean isTrackBumps()

setTrackBumps

public final void setTrackBumps(boolean trackBumps)

getRamaViewers

public final int[] getRamaViewers()

setRamaViewers

public final void setRamaViewers(int[] ramaViewers)

getBumps

public final int[][] getBumps()

setBumps

public final void setBumps(int[][] bumps)

getDistanceMonitors

public final int[][] getDistanceMonitors()

setDistanceMonitors

public final void setDistanceMonitors(int[][] distanceMonitors)

getHBonds

public final int[][] getHBonds()

setHBonds

public final void setHBonds(int[][] bonds)