Uses of Class
edu.sdsc.mbt.Fragment

Packages that use Fragment

edu.sdsc.mbt
edu.sdsc.mbt.viewables	This package provides classes which enable molecular biology data to be represented as visible/renderable viewable objects, plus, this package defines a top-level StructureDocument object to encapsulate the complete state of these objects and properties.

Uses of Fragment in edu.sdsc.mbt

Methods in edu.sdsc.mbt that return Fragment

Fragment	StructureMap.getFragment(int fragmentIndex) Get the Fragment at the specified index.
Fragment	Residue.getFragment() Get the parent fragment (if any) for this residue.
Fragment	Chain.getFragment(int fragmentIndex) Get the specified Fragment object.

Methods in edu.sdsc.mbt with parameters of type Fragment

int	StructureMap.getFragmentIndex(Fragment fragment) Get the index of the specified Fragment.

Uses of Fragment in edu.sdsc.mbt.viewables

Methods in edu.sdsc.mbt.viewables with parameters of type Fragment

java.lang.String	FragmentFormWireframe.getFragmentForm(Fragment fragment) Produce a fragment style for a wireframe representation.
java.lang.String	FragmentFormTube.getFragmentForm(Fragment fragment) Produce a fragment style for a tube representation.
java.lang.String	FragmentFormRibbon.getFragmentForm(Fragment fragment) Produce a fragment style for a ribbon representation.
java.lang.String	FragmentFormLadder.getFragmentForm(Fragment fragment) Produce a fragment style for a ladder representation.
java.lang.String	FragmentFormCylinder.getFragmentForm(Fragment fragment) Produce a fragment style for a cylinder representation.
java.lang.String	FragmentFormCartoon.getFragmentForm(Fragment fragment) Produce a fragment style for a cartoon representation.
java.lang.String	FragmentForm.getFragmentForm(Fragment fragment)
void	FragmentColorByType.getFragmentColor(Fragment fragment, float[] color) Produce a color based upon the conformation type.
void	FragmentColor.getFragmentColor(Fragment fragment, float[] color)