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| Packages that use StructureMap | |
| edu.sdsc.mbt | |
| edu.sdsc.mbt.util | This package provides classes which implement extra functionality on top of the core MBT classes (that is, capabilities that are not absolutely required by, or would otherwise overcomplicate, the core classes). |
| edu.sdsc.mbt.viewables | This package provides classes which enable molecular biology data to be represented as visible/renderable viewable objects, plus, this package defines a top-level StructureDocument object to encapsulate the complete state of these objects and properties. |
| edu.sdsc.mbt.viewers.GLViewerImpl | |
| edu.sdsc.sirius.util | |
| Uses of StructureMap in edu.sdsc.mbt |
| Fields in edu.sdsc.mbt declared as StructureMap | |
StructureMap |
StructureComponentEvent.structureMap
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| Methods in edu.sdsc.mbt that return StructureMap | |
StructureMap |
Structure.getStructureMap()
Return the StructureMap object that describes the derived (implied) hierarchy of primary and secondary structure data for the Structure. |
| Methods in edu.sdsc.mbt with parameters of type StructureMap | |
void |
StructureMap.addStructure(StructureMap map)
This method incorporates a new structure (fragment) into this structure by importing all data structures and updating names |
| Uses of StructureMap in edu.sdsc.mbt.util |
| Constructors in edu.sdsc.mbt.util with parameters of type StructureMap | |
DerivedInformation(Structure structure,
StructureMap structureMap)
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| Uses of StructureMap in edu.sdsc.mbt.viewables |
| Methods in edu.sdsc.mbt.viewables that return StructureMap | |
StructureMap |
StructureStyles.getStructureMap()
Return a reference to our StructureMap object. |
| Constructors in edu.sdsc.mbt.viewables with parameters of type StructureMap | |
StructureStyles(StructureMap structureMap)
Primary constructor. |
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| Uses of StructureMap in edu.sdsc.mbt.viewers.GLViewerImpl |
| Methods in edu.sdsc.mbt.viewers.GLViewerImpl with parameters of type StructureMap | |
static void |
SsGeometry.drawSs(Chain c,
javax.media.opengl.GL gl,
javax.media.opengl.glu.GLU glu,
com.sun.opengl.util.GLUT glut,
StructureMap structureMap,
StructureStyles styles,
boolean ribbon)
Builds a scene of the secondary structures, the list of SS being the one produced by the StructureMap argument based on what is
explicitely available in the data source file or from the Kabsch-Sander
algorithm. |
static void |
SsGeometry.drawSs(Chain c,
javax.media.opengl.GL gl,
javax.media.opengl.glu.GLU glu,
com.sun.opengl.util.GLUT glut,
StructureMap structureMap,
StructureStyles styles,
boolean ribbon,
int helixSmoothingSteps,
int strandSmoothingSteps,
int turnSmoothingSteps,
int coilSmoothingSteps)
Builds a scene of the secondary structures, the list of SS being the one produced by the StructureMap argument based on what is
explicitely available in the data source file or from the Kabsch-Sander
algorithm. |
static void |
SsGeometry.drawSs(Chain c,
javax.media.opengl.GL gl,
javax.media.opengl.glu.GLU glu,
com.sun.opengl.util.GLUT glut,
StructureMap structureMap,
StructureStyles styles,
boolean ribbon,
int helixSmoothingSteps,
int strandSmoothingSteps,
int turnSmoothingSteps,
int coilSmoothingSteps,
int helixSsShape)
Builds a scene of the secondary structures, the list of SS being the one produced by the StructureMap argument based on what is
explicitely available in the data source file or from the Kabsch-Sander
algorithm. |
static void |
SsGeometry.drawSs(Chain c,
javax.media.opengl.GL gl,
javax.media.opengl.glu.GLU glu,
com.sun.opengl.util.GLUT glut,
StructureMap structureMap,
StructureStyles styles,
boolean ribbon,
float helixQuality,
float strandQuality,
float turnQuality,
float coilQuality,
int helixSmoothingSteps,
int strandSmoothingSteps,
int turnSmoothingSteps,
int coilSmoothingSteps,
int helixCsType,
int strandCsType,
int turnCsType,
int coilCsType,
int helixSsShape)
Builds a scene of the secondary structures, the list of SS being the one produced by the StructureMap argument based on what is
explicitely available in the data source file or from the Kabsch-Sander
algorithm. |
| Uses of StructureMap in edu.sdsc.sirius.util |
| Methods in edu.sdsc.sirius.util with parameters of type StructureMap | |
static java.util.Vector |
StructureMath.getRotatedAtoms(StructureMap map,
Bond bond,
Atom atom)
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