A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

O

O - Static variable in class edu.sdsc.mbt.util.Element

OBLONG - Static variable in class edu.sdsc.mbt.viewers.GLViewerImpl.CrossSectionStyle

Standard - Styles: "Elliptical" (not elliptical yet) CrossSection

OCTAHEDRAL - Static variable in class edu.sdsc.mbt.util.ElementProperties

ORDER - Static variable in interface edu.sdsc.mbt.viewables.BondForm

OUTSIDE_BORDER - Static variable in class edu.sdsc.mbt.viewables.ResidueAnnotation

Octree - class edu.sdsc.mbt.util.Octree.

Octree class constructed with recursion in mind.

Octree(Octree, Octree, int, OctreeDataItem[], double[], double[]) - Constructor for class edu.sdsc.mbt.util.Octree

Construct an octree as a child of "parent" in a tree rooted at "root" with given data and corners.

Octree(int, OctreeDataItem[], double[]) - Constructor for class edu.sdsc.mbt.util.Octree

Constructor that is mostly used for instantiating the root tree.

OctreeAtomItem - class edu.sdsc.mbt.util.OctreeAtomItem.

OctreeAtomItem class.

OctreeAtomItem(Atom, int) - Constructor for class edu.sdsc.mbt.util.OctreeAtomItem

Construct an OctreeAtomItem from an Atom object.

OctreeDataItem - interface edu.sdsc.mbt.util.OctreeDataItem.

OctreeDataItem interface.

openImagePreviewPanel() - Method in class Viewer

openImagePreviewPanel() - Method in interface edu.sdsc.sirius.util.Manager

openSequence() - Method in class Viewer

openSequence() - Method in interface edu.sdsc.sirius.util.Manager

openURL(String) - Static method in class edu.sdsc.sirius.util.BrowserLauncher

Attempts to open the default web browser to the given URL.

order - Variable in class edu.sdsc.mbt.Bond

orthogonalize(float[], float[]) - Static method in class edu.sdsc.mbt.util.Algebra

Orthogonalize one vector to another.

outorder - Static variable in class edu.sdsc.sirius.viewers.SequenceViewerImpl.AlignmentSettings

output(int, String) - Static method in class edu.sdsc.mbt.util.Status

Output a message at the given status level.

output - Static variable in class edu.sdsc.sirius.viewers.SequenceViewerImpl.AlignmentSettings

outputtree - Static variable in class edu.sdsc.sirius.viewers.SequenceViewerImpl.AlignmentSettings