A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

V

VIS_HIDE - Static variable in class edu.sdsc.sirius.dialogs.VisibilityDialog

VIS_SHOW - Static variable in class edu.sdsc.sirius.dialogs.VisibilityDialog

VIS_SHOW_ONLY - Static variable in class edu.sdsc.sirius.dialogs.VisibilityDialog

Vec3d - class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3d.

Vec3f is simply a data container class for a 3-element vector.

Vec3d() - Constructor for class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3d

Vec3d(double[]) - Constructor for class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3d

Vec3d(double, double, double) - Constructor for class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3d

Vec3f - class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3f.

Vec3f is simply a data container class for a 3-element vector.

Vec3f() - Constructor for class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3f

Vec3f(float[]) - Constructor for class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3f

Vec3f(float, float, float) - Constructor for class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3f

Vector3f - class edu.sdsc.mbt.viewers.GLViewerImpl.util.Vector3f.

Vector3f(float, float, float) - Constructor for class edu.sdsc.mbt.viewers.GLViewerImpl.util.Vector3f

Vector3f(float[]) - Constructor for class edu.sdsc.mbt.viewers.GLViewerImpl.util.Vector3f

Vector3f(Vector3f) - Constructor for class edu.sdsc.mbt.viewers.GLViewerImpl.util.Vector3f

Vector3f() - Constructor for class edu.sdsc.mbt.viewers.GLViewerImpl.util.Vector3f

VectorSet - class edu.sdsc.sirius.util.VectorSet.

This class is a container for a variable length set of 3D vectors defined as double[3] arrays the internal coordinate system is set at 0,0,0.

VectorSet() - Constructor for class edu.sdsc.sirius.util.VectorSet

ViewEvent - class edu.sdsc.sirius.dialogs.ViewEvent.

ViewEvent(DisplayDialog) - Constructor for class edu.sdsc.sirius.dialogs.ViewEvent

Viewer - class Viewer.

Viewer() - Constructor for class Viewer

Viewer - interface edu.sdsc.sirius.viewers.Viewer.

This class provides the base functionality for all MBT Viewer objects.

ViewerParameters - class edu.sdsc.sirius.export.ViewerParameters.

ViewerParameters() - Constructor for class edu.sdsc.sirius.export.ViewerParameters

VirtualSphere2 - class edu.sdsc.mbt.viewers.GLViewerImpl.VirtualSphere2.

Implements a Virtual Sphere algorithm for 3D rotation using a 2D input device.

VirtualSphere2(int, int, int) - Constructor for class edu.sdsc.mbt.viewers.GLViewerImpl.VirtualSphere2

Primary constructor creates a virtual sphere controller using the specified x,y screen coordinate as the center and r as the radius of the controller's bounding circle.

VirtualSphere2() - Constructor for class edu.sdsc.mbt.viewers.GLViewerImpl.VirtualSphere2

Utility constructor creates a virtual sphere controller using default x,y screen coordinates as the center and default r as the radius of the controller's bounding circle.

VisibilityDialog - class edu.sdsc.sirius.dialogs.VisibilityDialog.

VisibilityDialog(JFrame, Manager, StructureViewer) - Constructor for class edu.sdsc.sirius.dialogs.VisibilityDialog

VisibilityEvent - class edu.sdsc.sirius.dialogs.VisibilityEvent.

VisibilityEvent(DisplayDialog) - Constructor for class edu.sdsc.sirius.dialogs.VisibilityEvent

value - Variable in class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3d

value - Variable in class edu.sdsc.mbt.viewers.StructureViewerImpl.vec.Vec3f

value - Variable in class edu.sdsc.sirius.dialogs.StericEvent

value - Variable in class edu.sdsc.sirius.dialogs.StructureEvent

valueChanged(ListSelectionEvent) - Method in class edu.sdsc.sirius.dialogs.JFontChooser

Processes events received from the various JList objects.

vectorLength(float[]) - Static method in class edu.sdsc.mbt.util.Algebra

vectorLength(double[]) - Static method in class edu.sdsc.mbt.util.Algebra

Return the cartesian length of the vector.

viewer - Variable in class edu.sdsc.mbt.viewables.StructureDocumentEvent

The Viewer object that was effected in the StructureDocument.

vis - Static variable in class edu.sdsc.sirius.ray.RayTraceUtil

visFlag - Variable in class edu.sdsc.sirius.dialogs.VisibilityDialog

visFlag - Variable in class edu.sdsc.sirius.dialogs.VisibilityEvent

visible - Variable in class edu.sdsc.mbt.Atom

visible - Variable in class edu.sdsc.mbt.Bond

visible - Variable in class edu.sdsc.mbt.Chain

visible - Variable in class edu.sdsc.mbt.Residue

visibleColumns - Variable in class edu.sdsc.sirius.viewers.SequenceViewerImpl.DisplayParameters

visibleSequences - Variable in class edu.sdsc.sirius.viewers.SequenceViewerImpl.DisplayParameters