A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

N

N - Static variable in class edu.sdsc.mbt.util.Element

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomColorByCharge

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomColorByElement

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomColorUniform

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomLabelByAtomCompound

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomLabelByAtomElement

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomLabelByAtomName

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomLabelByChainId

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomLabelNone

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomRadiusByConstant

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomRadiusByCpk

NAME - Static variable in class edu.sdsc.mbt.viewables.AtomRadiusByScaledCpk

NAME - Static variable in class edu.sdsc.mbt.viewables.BondColorByAtomColor

NAME - Static variable in class edu.sdsc.mbt.viewables.BondColorByElement

NAME - Static variable in class edu.sdsc.mbt.viewables.BondFormOrder

NAME - Static variable in class edu.sdsc.mbt.viewables.BondFormSimple

NAME - Static variable in class edu.sdsc.mbt.viewables.BondFormSplit

NAME - Static variable in class edu.sdsc.mbt.viewables.BondLabelByDistance

NAME - Static variable in class edu.sdsc.mbt.viewables.BondLabelNone

NAME - Static variable in class edu.sdsc.mbt.viewables.BondRadiusAsStick

NAME - Static variable in class edu.sdsc.mbt.viewables.BondRadiusAsWire

NAME - Static variable in class edu.sdsc.mbt.viewables.BondRadiusByAtomRadius

NAME - Static variable in class edu.sdsc.mbt.viewables.BondRadiusByScaledAtomRadius

NAME - Static variable in class edu.sdsc.mbt.viewables.ChainColorById

NAME - Static variable in class edu.sdsc.mbt.viewables.FragmentColorByType

NAME - Static variable in class edu.sdsc.mbt.viewables.FragmentFormCartoon

NAME - Static variable in class edu.sdsc.mbt.viewables.FragmentFormCylinder

NAME - Static variable in class edu.sdsc.mbt.viewables.FragmentFormLadder

NAME - Static variable in class edu.sdsc.mbt.viewables.FragmentFormRibbon

NAME - Static variable in class edu.sdsc.mbt.viewables.FragmentFormTube

NAME - Static variable in class edu.sdsc.mbt.viewables.FragmentFormWireframe

NAME - Static variable in class edu.sdsc.mbt.viewables.ResidueColorByCharge

NAME - Static variable in class edu.sdsc.mbt.viewables.ResidueColorByElement

NAME - Static variable in class edu.sdsc.mbt.viewables.ResidueColorByHydrophobicity

NAME - Static variable in class edu.sdsc.mbt.viewables.ResidueColorByType

NAME - Static variable in class edu.sdsc.mbt.viewables.ResidueColorDefault

NAME - Static variable in class edu.sdsc.mbt.viewables.ResidueColorScaled

NAME - Static variable in class edu.sdsc.mbt.viewables.ResidueColorUniform

NAME - Static variable in class edu.sdsc.mbt.viewables.RibbonColorDefault

NAME - Static variable in class edu.sdsc.mbt.viewables.RibbonColorUniform

NATIVE_LAF - Static variable in class edu.sdsc.mbt.viewables.StylesPreferences

NAVIGATION_TABLE - Static variable in class edu.sdsc.sirius.dialogs.TableImpl.ResultPanel

NAVIGATION_TABLE - Static variable in class edu.sdsc.sirius.dialogs.TableImpl.TableViewPanel

NO_BORDER - Static variable in class edu.sdsc.mbt.viewables.ResidueAnnotation

Na - Static variable in class edu.sdsc.mbt.util.Element

Ne - Static variable in class edu.sdsc.mbt.util.Element

Ni - Static variable in class edu.sdsc.mbt.util.Element

NucleicAcidInfo - class edu.sdsc.mbt.util.NucleicAcidInfo.

Provides static information about Nucleic Acids for DNA/RNA such as base character codes, base names, and base pairing rules.

NucleicAcidInfo() - Constructor for class edu.sdsc.mbt.util.NucleicAcidInfo

name - Variable in class edu.sdsc.mbt.Atom

The macromolecular ID (element name).

name - Variable in class edu.sdsc.mbt.Conformation

For example, "helix_BA", "turn_1A"

name - Variable in class edu.sdsc.mbt.Symmetry

The symmetry space group name.

name - Variable in class edu.sdsc.mbt.util.Element

name - Variable in class edu.sdsc.sirius.builder.FragmentRecord

name - Variable in class edu.sdsc.sirius.dialogs.TableImpl.BlastLineData

name - Variable in class edu.sdsc.sirius.dialogs.TableImpl.LineData

names() - Static method in class edu.sdsc.mbt.viewables.AtomColorRegistry

Return an Enumeration of String values for all registered AtomColor objects.

names() - Static method in class edu.sdsc.mbt.viewables.AtomLabelRegistry

Return an Enumeration of String values for all registered AtomLabel objects.

names() - Static method in class edu.sdsc.mbt.viewables.AtomRadiusRegistry

Return an Enumeration of String values for all registered AtomRadius objects.

names() - Static method in class edu.sdsc.mbt.viewables.BondColorRegistry

Return an Enumeration of String values for all registered BondColor objects.

names() - Static method in class edu.sdsc.mbt.viewables.BondFormRegistry

Return an Enumeration of String values for all registered BondForm objects.

names() - Static method in class edu.sdsc.mbt.viewables.BondLabelRegistry

Return an Enumeration of String values for all registered BondLabel objects.

names() - Static method in class edu.sdsc.mbt.viewables.BondRadiusRegistry

Return an Enumeration of String values for all registered BondRadius objects.

names() - Static method in class edu.sdsc.mbt.viewables.ChainColorRegistry

Return an Enumeration of String values for all registered ChainColor objects.

names() - Static method in class edu.sdsc.mbt.viewables.FragmentColorRegistry

Return an Enumeration of String values for all registered FragmentColor objects.

names() - Static method in class edu.sdsc.mbt.viewables.FragmentFormRegistry

Return an Enumeration of String values for all registered FragmentForm objects.

names() - Static method in class edu.sdsc.mbt.viewables.ResidueColorRegistry

Return an Enumeration of String values for all registered ResidueColor objects.

negate() - Method in class edu.sdsc.mbt.viewers.GLViewerImpl.util.Vector3f

next(StructureComponent) - Method in class edu.sdsc.mbt.StructureComponentIterator

Iterates through a set of StructureComponent objects.

nextEntry() - Method in class edu.sdsc.sirius.dialogs.DataWBListerDialog

nextIndex() - Method in class edu.sdsc.mbt.StructureComponentIterator

Returns the index of the next match or -1 if there are no more matches.

normalize(Quat4f) - Method in class edu.sdsc.mbt.viewers.GLViewerImpl.util.Quat4f

Sets the value of this quaternion to the normalized value of quaternion q1.

normalize() - Method in class edu.sdsc.mbt.viewers.GLViewerImpl.util.Quat4f

Normalizes the value of this quaternion in place.

normalize() - Method in class edu.sdsc.mbt.viewers.GLViewerImpl.util.Vector3f

normalizeVector(double[], double[]) - Static method in class edu.sdsc.mbt.util.Algebra

Compute the normalized inVector storing the result in outVector.

normalizeVector(double[]) - Static method in class edu.sdsc.mbt.util.Algebra

Compute the normalized vector in place.

normalizeVector(float[]) - Static method in class edu.sdsc.mbt.util.Algebra

normalizeVector(float[], float[]) - Static method in class edu.sdsc.mbt.util.Algebra

normals - Static variable in class edu.sdsc.sirius.ray.RayTraceUtil

number - Variable in class edu.sdsc.mbt.Atom

The atom serial number.

number - Variable in class edu.sdsc.sirius.builder.FragmentButton

number - Variable in class edu.sdsc.sirius.builder.FragmentRecord