org.ngbw.web.actions
Class StructureAlignmentDispatcher

java.lang.Object
  javax.servlet.GenericServlet
      javax.servlet.http.HttpServlet
          org.ngbw.web.actions.StructureAlignmentDispatcher

All Implemented Interfaces:

java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig

public class StructureAlignmentDispatcher
extends javax.servlet.http.HttpServlet

This servlet resides on the server and accepts requests for structure alignments It reads the two input pdb files, runs TMalign on the server in a uniquely named directory and sends the output back to the caller as an array of Strings - one for stdout and the other for the generated superposition file (tm.sup).

Author:

Sasha Buzko

See Also:

Serialized Form

Constructor Summary

StructureAlignmentDispatcher()

Method Summary

void	doGet(javax.servlet.http.HttpServletRequest req, javax.servlet.http.HttpServletResponse res)
void	doPost(javax.servlet.http.HttpServletRequest req, javax.servlet.http.HttpServletResponse res)

Methods inherited from class javax.servlet.http.HttpServlet

service

Methods inherited from class javax.servlet.GenericServlet

destroy, getInitParameter, getInitParameterNames, getServletConfig, getServletContext, getServletInfo, getServletName, init, init, log, log

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

StructureAlignmentDispatcher

public StructureAlignmentDispatcher()

Method Detail

doPost

public void doPost(javax.servlet.http.HttpServletRequest req,
                   javax.servlet.http.HttpServletResponse res)
            throws javax.servlet.ServletException,
                   java.io.IOException

Overrides:

doPost in class javax.servlet.http.HttpServlet

Throws:

javax.servlet.ServletException

java.io.IOException

doGet

public void doGet(javax.servlet.http.HttpServletRequest req,
                  javax.servlet.http.HttpServletResponse res)
           throws javax.servlet.ServletException,
                  java.io.IOException,
                  java.io.OptionalDataException

Overrides:

doGet in class javax.servlet.http.HttpServlet

Throws:

javax.servlet.ServletException

java.io.IOException

java.io.OptionalDataException