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-> + A C G T
A * a b c
C * * d e
G * * * 1
T * * * *
-> + A C G T
A * 0 1 2
C * * 3 4
G * * * 5
T * * * *
if constraints were {0,1,1,0,0,1} then would be constrained so a-c = c-g = c-t and a-g = a-t = g-t (and there would be only one parameter)
-> + A C G T
A * 0 1 2
C * * 3 4
G * * * 5
T * * * *
if constraints were {0,1,1,0,0,1} then would be constrained so a-c = c-g = c-t and a-g = a-t = g-t (and there would be only one parameter)
-> + A C G T
A * 0 1 2
C * * 3 4
G * * * 5
T * * * *
if constraints were {0,1,1,0,0,1} then would be constrained so a-c = c-g = c-t and a-g = a-t = g-t (and there would be only one parameter)
NexusParseException object
NexusParseException object
NexusTokenParser
NexusTokenParser
convertNL flag.
ignoreComments flag.
readWS flag.
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