pal.statistics
Interface LikelihoodEvaluator

public interface LikelihoodEvaluator

Nested Class Summary

static interface	LikelihoodEvaluator.MLResult
static class	LikelihoodEvaluator.SimpleMLResult
static class	LikelihoodEvaluator.Utils

Method Summary

double	calculateLikelihood(Tree tree, Alignment alignment)
LikelihoodEvaluator.MLResult	getMLOptimised(Tree tree, Alignment alignment, AlgorithmCallback callback)

Method Detail

getMLOptimised

public LikelihoodEvaluator.MLResult getMLOptimised(Tree tree,
                                                   Alignment alignment,
                                                   AlgorithmCallback callback)

calculateLikelihood

public double calculateLikelihood(Tree tree,
                                  Alignment alignment)