Submit Job Output


	What would you like to do? Valid commands are:
	List Jobs (LJ); Submit Job (S); Delete Job (D); List Results (LR);
	Download Results (DR); Get Tools (GT); Exit (E)
	s
	User typed s
	Please provide a tool to use (ex. CLUSTALW)
	CLUSTALW
	User typed CLUSTALW
	Please provide an input file:
	ctest1.fasta
	User typed ctest1.fasta
	Would you like to provide a tree file? (Y/N)? N
	User typed N
	Would you like the results to be emailed to you (Y/N)
	Y
	User typed 
	Please provide a job ID number (eg. 110) that you will recognize
	121
	User typed 121
	Submitting a job with input file: ./ctest1.fasta
	-u abl012:mypass -H cipres-appkey:PerlDemo-FD0F3FD7A5D04A8FA4C75F7A5F3D8B2C -F tool=CLUSTALW 
	-F input.infile_=./ctest1.fasta -F metadata.statusEmail=TRUE -F metadata.clientJobId=121 
	-F vparam.runtime_=1
	User wants their results emailed
	Email bool is true

	<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
	<jobstatus>
	    <selfUri>
	        <url>https://cipresrest.sdsc.edu/cipresrest/v1/job/abl012/NGBW-JOB-CLUSTALW-DFF58EB411354740A27FEEBDAFDAC413</url>
	        <rel>jobstatus</rel>
	        <title>NGBW-JOB-CLUSTALW-DFF58EB411354740A27FEEBDAFDAC413</title>
	    </selfUri>
	    <jobHandle>NGBW-JOB-CLUSTALW-DFF58EB411354740A27FEEBDAFDAC413</jobHandle>
	    <jobStage>QUEUE</jobStage>
	    <terminalStage>false</terminalStage>
	    <failed>false</failed>
	    <metadata><br>
	        <entry><br>
	            <key>clientJobId</key>
	            <value>121</value>
	        </entry>
	        <entry>
	            <key>statusEmail</key>
	            <value>true</value>
	        </entry>
	    </metadata>
	    <dateSubmitted>2015-01-03T14:13:07-08:00</dateSubmitted>
	    <resultsUri>
	        <url>https://cipresrest.sdsc.edu/cipresrest/v1/job/abl012/NGBW-JOB-CLUSTALW-DFF58EB411354740A27FEEBDAFDAC413/output</url>
	        <rel>results</rel>
	        <title>Job Results</title>
	    </resultsUri>
	    <workingDirUri>
	        <url>https://cipresrest.sdsc.edu/cipresrest/v1/job/abl012/NGBW-JOB-CLUSTALW-DFF58EB411354740A27FEEBDAFDAC413/workingdir</url>
	        <rel>workingdir</rel>
	        <title>Job Working Directory</title>
	    </workingDirUri>
	    <messages>
	        <message>
	            <timestamp>2015-01-03T14:13:08-08:00</timestamp>
	            <stage>QUEUE</stage>
	            <text>Added to cipres run queue.</text>
	        </message>
	    </messages>
	</jobstatus>