package org.ngbw.examples;


import java.util.HashMap;
import java.util.Map;
import java.util.concurrent.ExecutorService;
import java.util.concurrent.Executors;

import org.ngbw.sdk.api.tool.ProcessResult;
import org.ngbw.sdk.tool.LocalProcessWorker;


public class LocalProcessWorkerSample {

	/**
	 * @param args
	 */
	public static void main(String[] args) {
		
		/*
		ExecutorService pool = Executors.newCachedThreadPool();
		
		StreamReaderImplementor sr = new StreamReaderImplementor(pool);
		String cmd = "/usr/local/blast/bin/blastall -p blastp -d SWISSPROT -i query.fasta -a 2 -o blast.txt";
		
		// redirect throws an error:  [NULL_Caption] ERROR: Arguments must start with '-' (the offending argument #9 was: '>')
		//String cmd = "/usr/local/blast/bin/blastall -p blastp -d SWISSPROT -i query.fasta -a 2 > blast.txt";
		
		LocalProcessWorker worker = new LocalProcessWorker(cmd, sr);
		Map<String, String> cfg = new HashMap<String, String>();
		cfg.put("workspace", "/fs/swami-ws/");
		worker.configure(cfg);
		ProcessResult result = worker.call();
		
		System.out.println("STDOUT: " + result.getSTDOUT());
		System.out.println("STDERR: " + result.getSTDERR());
		*/

	}

}