Protein parsimony algorithm, version 3.6
5 species, 10 sites
Name Sequences
---- ---------
Alpha ABCDEFGHIK
Beta ..--......
Gamma ?...S..*??
Delta CIK.......
Epsilon DIK.......
One most parsimonious tree found:
+--------Gamma
!
+--2 +--Epsilon
! ! +--4
! +--3 +--Delta
1 !
! +-----Beta
!
+-----------Alpha
remember: this is an unrooted tree!
requires a total of 15.000
steps in each position:
0 1 2 3 4 5 6 7 8 9
*-----------------------------------------
0! 3 1 4 3 2 0 0 2 0
10! 0
From To Any Steps? State at upper node
( . means same as in the node below it on tree)
1 ANCDEFGHIK
1 2 no ..........
2 Gamma yes ?B..S..*??
2 3 yes ..?.......
3 4 yes ?IK.......
4 Epsilon maybe D.........
4 Delta yes C.........
3 Beta yes .B--......
1 Alpha maybe .B........
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