MFOLD

MFOLD performs RNA and DNA secondary structure prediction using nearest neighbor thermodynamic rules. The Mfold program is also part of the GCG program suite. It can accept input in Genbank, GCG and Fasta formats.

TEST DATA SET

Data Contents:

> S.cerevisiae 5S ribosomal RNA. ggttgcggccatatctaccagaaagcaccgtttcccgtccgatcaactgtgttaagctggtagagcctgaccgagtagtgtatgggtgaccatacgcgaaactcaggtgctgcaatct

CONTENTS OF OUTPUT FILE (with default settings, from the mfold server)

test output 1(pdf)
test output 2(pdf)
M. Zuker
Mfold web server for nucleic acid folding and hybridization prediction.
Nucleic Acids Res. 31 (13), 3406-15, (2003)