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Topic
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Explanation
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Working directory
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Changing the working directory will set the intial location when opening or saving files.
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Default structure display
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The selected option will specify the rendering mode for a newly loaded structure.
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Startup rendering quality
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The selected option indicates the quality level of structure rendering, if any non-lines mode is selected.
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Default selection color
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Sets the selection color. It can be changed by clicking the colored
button and selecting the desired color using one of the three selection
panels |
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Menu and label font size
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Screen fonts may look either too large or too small on different operating systems and displays with
different screen resolutions. This can be changed by adjusting the default size slider. The change takes effect after
application restart.
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Thickness of bond lines
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Sets the width of bonds in the line representation mode. Depending on screen resolution,
different width might be preferred. Typically, the width value is 2 or 3.
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Protein ribbon coloring
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Sets how the protein ribbon representation will be colored: with the structure or independently.
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Miscellaneous options
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Show bond orders if available. When this option is selected, bonds are shown according to their orders in the bond line display mode.
Otherwise, only single lines are displayed.
Show bound waters in proteins. Choose to whether display crystallographic water with the protein structure or hide it. Individual
water molecules can also be shown or hidden separately from within the viewer.
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