// This file is part of BULL, a program for phylogenetic simulations // most of the code was written by Mark T. Holder. // It is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. // // Some of the code is from publically available source by Paul Lewis, Ziheng Yang, // John Huelsenbeck, David Swofford , and others (as noted in the code). // In fact the main structure of the program was created by modifying Paul Lewis' // basiccmdline.cpp from his NCL // // This code was used in Mark's dissertation, some changes were made in order to // get it to compile on gcc. It is possible that this porting introduced bugs (very // little debugging has been done on UNIX platforms). I would suggest checking // the simulator by generating data on trees with short branches, etc. #ifndef XNEXUS_H #define XNEXUS_H #include #include "ncl/nxsexception.h" class XBull : public NxsException { public: XBull(const std::string & s, file_pos fp = 0, long fl = 0L, long fc = 0L) :NxsException(s, fp, fl, fc) {} XBull(const std::string &s, const NxsToken &t) :NxsException(s, t) {} XBull(const std::string &s, const ProcessedNxsToken &t) :NxsException(s, t) {} }; #endif