// This file is part of BULL, a program for phylogenetic simulations // most of the code was written by Mark T. Holder. // It is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. // // Some of the code is from publically available source by Paul Lewis, Ziheng Yang, // John Huelsenbeck, David Swofford , and others (as noted in the code). // In fact the main structure of the program was created by modifying Paul Lewis' // basiccmdline.cpp from his NCL // // This code was used in Mark's dissertation, some changes were made in order to // get it to compile on gcc. It is possible that this porting introduced bugs (very // little debugging has been done on UNIX platforms). I would suggest checking // the simulator by generating data on trees with short branches, etc. // This file is part of BULL, a program for phylogenetic simulations // most of the code was written by Mark T. Holder. // It is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. // // Some of the code is from publically available source by Paul Lewis, Ziheng Yang, // John Huelsenbeck, David Swofford , and others (as noted in the code). // In fact the main structure of the program was created by modifying Paul Lewis' // basiccmdline.cpp from his NCL // // This code was used in Mark's dissertation, some changes were made in order to // get it to compile on gcc. It is possible that this porting introduced bugs (very // little debugging has been done on UNIX platforms). I would suggest checking // the simulator by generating data on trees with short branches, etc. #ifndef _ENCODED_CHARS #define _ENCODED_CHARS namespace bull { }//namespace bull #endif