from PIPRes.util.cipres import cipresClientInit, cipresGetLogger, getCipresRegistry
from PIPRes.util.cipres_registry_from_xml import composeRegistryQuery, getFirstCipresService
from PIPRes.util.io import logException, expandPath, getCipresResourcesFile, getCipresTestFile, getCipresUserFile, getCipresFile, getCipresConfigFilePath
from PIPRes.wrap.idl import CipresIDL_api1, CipresIDL_api2, hasEdgeLengths
from PIPRes.basic import approxEqual, getContentFromNexus
from PIPRes.cipres_types import CipresTree, dnaToCipresMatrix
import CORBA
import sys, os