lib\/Bio\/README ~$ \.gz$ \.bak$ Makefile$ ^MANIFEST\.skip$ \.old$ ^blib/ ^pm_to_blib \.DS_Store$ \.svn \bCVS\b \.orig$ \.rej$ \.tmp$ \.diff$ tmon\.out$ ^cover* deleteme* \.cvsignore \.project \.includepath Doxyfile lib\/Bio\/Tools\/Run\/MrBayes\.pm