A symmetric matrix of non-negative values for multidimensional Brownian motion and similar continuous valued models.
Models of change at a molecular site.
A matrix of non-negative instantaneous transition rates.
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The general time reversible model and its varients.
Models of change at a molecular site or a discrete organism character.
This is Kimura's (1980) two parameter model.
A model is something that estimates likelihoods of trees or character histories.