AUTOMAKE_OPTIONS = subdir-objects
AM_CPPFLAGS = -I@top_srcdir@/config -I@srcdir@ -I@srcdir@/.. $(ORB_CPPFLAGS) $(BOOST_CPPFLAGS) -I@abs_top_srcdir@/framework/C++ -I$(top_builddir)/framework/C++ -I$(ORB_COS_INC_DIR)
AM_CXXFLAGS = $(ORB_CXXFLAGS)
AM_LDFLAGS  = $(ORB_LDFLAGS) $(BOOST_LDFLAGS) -L$(top_builddir)/framework/C++/CipresCommlib
LDADD       = $(ORB_LIBS) -lcipres

bin_PROGRAMS = read_nexus_server tree_merge_server

read_nexus_server_SOURCES = 			\
	read_nexus/cipres_nexus_reader.cpp 	\
	read_nexus/cipres_nexus_reader.hpp \
	read_nexus/read_nexus_i.cpp 		\
	read_nexus/read_nexus_i.hpp 		\
	read_nexus/read_nexus_main.cpp

read_nexus_server_LDADD = -L../ncl -lncl -L../phycas -lphycas $(LDADD)


tree_merge_server_SOURCES = 		\
	tree_merge/tree_merge_i.cpp 	\
	tree_merge/tree_merge_i.hpp 	\
	tree_merge/tree_merge_main.cpp 	

#	$(PHYCAS_ROOT)/phycas/modules/scm/scm.cpp 	
#	$(PHYCAS_ROOT)/phycas/modules/scm/wrap_scm.cpp 
tree_merge_server_LDADD = -L../ncl -lncl -L../phycas -lphycas $(LDADD)

install-exec-hook:
	mv "@bindir@/read_nexus_server" "@abs_srcdir@/org.cipres.PhycasReadNexus"
	"$(bindir)/install_service.sh" "-Darchive.path=@abs_srcdir@/org.cipres.PhycasReadNexus" -Dreinstall.service
	mv "@bindir@/tree_merge_server" "@abs_srcdir@/org.cipres.PhycasSCMTreeMerge"
	"$(bindir)/install_service.sh" "-Darchive.path=@abs_srcdir@/org.cipres.PhycasSCMTreeMerge" -Dreinstall.service

uninstall:
	"$(bindir)/install_service.sh" -Dservice.name=org.cipres.PhycasReadNexus -Duninstall.service
	"$(bindir)/install_service.sh" -Dservice.name=org.cipres.PhycasSCMTreeMerge -Duninstall.service

EXTRA_DIST = 		\
	org.cipres.PhycasReadNexus	\
	org.cipres.PhycasSCMTreeMerge	\
	VC7

dist-hook:
	find "$(distdir)/org.cipres.PhycasReadNexus" -depth -name .svn -and -type d -and -exec rm -rf {} \; 
	find "$(distdir)/org.cipres.PhycasSCMTreeMerge" -depth -name .svn -and -type d -and -exec rm -rf {} \; 
	find "$(distdir)/VC7" -depth -name .svn -and -type d -and -exec rm -rf {} \;