cipres.application.use_colocated_registry=1
Rid3Example.use_colocated_registry=1
ClustalExample.use_colocated_registry=1
mesquite.use_colocated_registry=1

# cipres.registry.file.ignore=1

# Cipres Registry Application configures itself to use this this port.  
# This port number must agree with the port number in cipres.registry.ior.
#
# TL: I changed this to try to avoid using a value that can conflict
# with anything in the ephemeral port range (the range of port numbers that
# are assigned to client side of connections or to servers binding to port 0).
# Some OS's can be configured to use different port ranges, but 5000 - 49151
# seems like the safest range.  There are no guarantees, so a "Bind error. Address 
# in use" is always a possibility.
cipres.registry.port=5001

# Clients can find the Registry Application at this ior.
cipres.registry.ior=corbaloc::127.0.0.1:5001/CipresRegistry


# If you want to run services on other machines that have cipres installed, list
# the iors for their registry applications here.   These registries should be up
# and running before  you start the cipres application and they must not bu
# running on the loopback address 127.0.0.1!  Separate multiple registries with
# commas.
# cipres.registry.federation=corbaloc::@@@REMOTE_HOST@@@:5001/CipresRegistry

# Cipres registry retry params - you may need to adjust these for your system.
# When the registry starts a service it waits for the service to write it's
# ior to a tmp file.  Retry Interval is in milliseconds. 
cipres.registry.retryCount=12
cipres.registry.retryInterval=2000

# The value of this property will determine whether the ReadNexus 
# service will read in a nexus file from a local file or read in its 
# content as a String.  When using a client application on the same 
# machine as the ReadNexus binary, leave the default of this property 
# as zero for better performance.  Change it to 1 if the client 
# application is not running on the same machine as the ReadNexus service
cipres.application.sendNexusAsString=0

# this sets the default directory where the cipresapp looks for nexus files
# the default setting is a relative path from the cipres_dist directory
# cipres.application.defaultNexusFileDir=/Users/Me/Documents/MyNexusFileDir

# PIPRes python scripts create their own in-process registry object 
# if this is set.  If not set, it uses the registry process at cipres.registry.ior.
# As of September 8, the PIPRes registry parsing is out-of-date, so do not
# set this to 1 unless you are confident that it is working again.
cipres.pipres.use_colocated_registry=0


# List of extra directories to load registry from.  Separator is semi-colon.
# Directories listed here must be the parent of the directory that contains
# the registry file, eg, /Users/terri/service1/terris_service/ would have
# a registry.xml file.

# The registry looks for installed services and their registry entries (registry.xml files
# and corresponding configure.properties files) in subdirectories of share/resources/services
# and <cipres_user_dir>/services.  You can use cipres.registry.extradirs.list to tell
# the registry to load services from a list of additional directories too.  The directories
# listed must be the parent of the directory that contains a registry.xml file.  The list
# is semi-colon delimited.  Any subdirs of the specified dirs that don't contain a registry.xml
# file are skipped.
# cipres.registry.extradirs.list=/Users/terri/service1;/Users/terri/service2

# The port that a user's registry service should attempt to bind to the
# first time it's started on this host
cipres.registry.nextPort=5001