6/6/2005 THIS FILE NEEDS TO BE UPDATED, THINGS HAVE CHANGED. 
$Author: mholder $



TO BUILD Java stuff: 
	see README.txt in java directory.

TO BUILD C++ stuff: 

	- You also need to set CIPRES_LIB_ROOT to this directory 

	- 6/20/2005 - see readme.txt in C++ subdirectory to build libCipres.a.

	- cd phyloservices/dcm3 and run make to build a corba-ized TreeDecompose server.

	- go to paup-cvs, run "configure --enable-cipres-corba --enable-future-code"
	and maybe --enable-debugging to build build a corba-ized version of paup. 

	- go to examples and run make, to build ticlient and dcm3client.  As of 6/20/2005 - not
	sure these are up to date.

	- goto phycasdev/cipres_services.  Set PHYCAS_ROOT, LOKI_ROOT and NCL_ROOT to phycasdev.
	reconf, configure, make.  Executable we need for recidcm3 is tree_merge_server in 
	cipres_services/tree_merge.

TO RUN:

	6/20/2005 the following is a little out of date.

	- cd dcm3 and run "./cipres_dcm3".  The program writes an object reference
	to "iorfile.txt" in the current directory.

	- cd examples and run "./dcm3client ../dcm3/iorfile.txt".


	- cd paup-cvs and run "./paup".  Paup writes an object reference to 
	"iorfile.txt" in the current directory.

	- cd examples and run:  ./ticlient <paupdirectory>/iorfile.txt

WINDOWS
	To build using the .vcproj files you must set some environment variables first.
	I run a batch file called cipresvars.bat, then start visual studio from
	the command line by entering "devenv".

	My cipresvars.bat looks like this:


	REM set visual studio env vars using the batch file they provide:
	call vcvars32_net

	REM the following are used within the .vcproj files:
	set ACE_INC_DIRS=%ACE_ROOT%;%TAO_ROOT%;%TAO_ROOT%\orbsvcs;%TAO_ROOT%\orbsvcs\orbsvcs 
	set ACE_DEBUG_LIB_DIRS=%ACE_ROOT%\ace;%TAO_ROOT%\tao;%TAO_ROOT%\tao\PortableServer;%TAO_ROOT%\orbsvcs\orbsvcs
	set ACE_DEBUG_LIBS=TAOd.lib TAO_CosNamingd.lib aced.lib TAO_PortableServerd.lib
	set BOOST_INC_DIR=c:\boost\include\boost-1_32