/*
* This module defines standard accessors and 
* mutators for Cipres API2 interfaces. The idea is
* that most inputs and outputs of services could be
* generalized/abstracted away, so new services would be
* easier to implement, reusing much of the type conversions.
* 
* $Id: IO.IDL 1632 2006-07-11 21:59:01Z rvosa $ 
*/
#include "api2/Types.idl"
module CipresIDL_api2 {

    /* ITERATOR */
    interface Iterator {
        any next();
        any previous();
        any first();
        any last();
        any getByIndex(in long i);
        boolean exists(in long i);
    };
    
    /* STACK */
    interface Stack {
        void push(in any obj);
        any pop();
        void unshift(in any obj);
        any shift();
    };
    
    /* ATTACHMENTS */
    interface AttachmentInput {
        void setAttachment(in Attachment att);
    };
    interface AttachmentOutput {
        Attachment getAttachment();
    };
    interface AttachmentSeqInput {
        void setAttachmentSeq(in AttachmentSeq attseq);
    };
    interface AttachmentSeqOutput {
        AttachmentSeq getAttachmentSeq();
    };
    
    /* TAXA */
    interface TaxonInput {
        void setTaxon(in Taxon tax);
    };
    interface TaxonOutput {
        Taxon getTaxon();
    };
    interface TaxaListInput {
        void setTaxa(in TaxaList list);
    };
    interface TaxaListOutput {
        TaxaList getTaxa();
    };
    
    /* TREES */
    interface TreeScoreInput {
        void setTreeScore(in TreeScore ts);
    };
    interface TreeScoreOutput {
        TreeScore getTreeScore();
    };
    interface TreeInput {
        void setTree(in Tree tr);
    };
    interface TreeOutput {
        Tree getTree();
    };
    interface TreeListInput {
        void setTrees(in TreeList trs);
    };
    interface TreeListOutput {
        TreeList getTrees();
    };
    
    /* MATRICES */
    interface DataMatrixInput {
        void setDataMatrix(in DataMatrix matrix);
    };
    interface DataMatrixOutput {
        DataMatrix getDataMatrix();
    };    
    interface DataMatrixListInput {
    	void setDataMatrixList(in DataMatrixList list);
    };
    interface DataMatrixListOutput {
    	DataMatrixList getDataMatrixList();
    };
};