#include "api1/Cipres.idl"
#include <CosEventChannelAdmin.idl>

module CipresIDL_api1
{
	interface MatrixAlign: Scriptable, LifeCycle 
	{
		void setTaxa(in TaxonInfoSeq taxa);
		void setInputMatrix(in DataMatrix characters)
				raises (BadArgException);	
		void setGuideTree(in Tree guideTree);
		TaxonInfoSeq getTaxa();
		DataMatrix getAlignedMatrix();
		Tree getTree(in CosEventChannelAdmin::ProxyPushConsumer proxyConsumer);
		double getScore();
	};
};