#include "CipresCommlib/CipresHelper.h"
using std::endl;
using std::ostream;

ostream & operator << (ostream &outs, const CipresIDL_api1::DataMatrix &matrix)
{
	outs << "DataMatrix symbols = " << matrix.m_symbols 
		<< ", m_numCharacters = " << matrix.m_numCharacters 
		<< ", datatype = " << matrix.m_datatype
		<< std::endl;
	outs << "Raw matrix : " << endl;
	outs << matrix.m_matrix;

	outs << "Lookup table: " << endl;
	outs << matrix.m_charStateLookup << endl;
	return outs;
}

ostream & operator << (ostream &outs, const CipresIDL_api1::CharStateLookup &matrix)
{
	for (unsigned int i = 0; i < matrix.length(); i++)
	{
		outs << "Row " << i << ": " << matrix[i] << std::endl;
	}
	return outs;
}

ostream & operator << (ostream &outs, const CipresIDL_api1::StateSet &stateSet)
{
	for (unsigned int i = 0; i < stateSet.length(); i++)
	{
		outs << std::hex  << (unsigned int)stateSet[i] << " ";
	}
	return outs;
}

ostream & operator << (ostream &outs, const CipresIDL_api1::Characters &characters)
{
	for (unsigned int i = 0; i < characters.length(); i++)
	{
		outs << std::hex  << (unsigned int)characters[i] << " ";
	}
	return outs;
}


ostream & operator << (ostream &outs, const CipresIDL_api1::RawMatrix &matrix)
{
	for (unsigned int i = 0; i < matrix.length(); i++)
	{
		outs << "Row " << i << ": " << matrix[i] << std::endl;
	}
	return outs;
}

ostream & operator << (ostream &outs, const CipresIDL_api1::TreeScore  &treeScore)
{
	switch(treeScore._d())
	{
		case CipresIDL_api1::INT_SCORE_TYPE:
			outs << "Score = " << treeScore.intScore();
			break;
		case CipresIDL_api1::DOUBLE_SCORE_TYPE:
			outs << "Score = " << treeScore.doubleScore();
			break;
		default:
			outs << "Score = " << "NO SCORE";
			break;
	}
	return outs;
}

ostream & operator << (ostream &outs, const CipresIDL_api1::Tree  &tree)
{
	outs << "Score = " << tree.m_score << " Tree: " << tree.m_newick;
	return outs;
}

// Output a sequence of sequences of strings, one sequence per line.
ostream & operator << (ostream &outs, const CipresIDL_api1::TaxonSeqSeq  &taxonSubsets)
{
	for (unsigned int i = 0; i < taxonSubsets.length(); i++)
	{
		outs << taxonSubsets[i] << std::endl;
	}
	return outs;
}

// Output a sequence of strings
ostream & operator << (ostream &outs, const CipresIDL_api1::TaxonSeq  &taxonSeq)
{
	for (unsigned int i = 0; i < taxonSeq.length(); i++)
	{
		outs << taxonSeq[i] << "\t"; 
	}
	return outs;
}