setenv JAVA_HOME /fs/software/i686/stow/jdk1.5.0_04
setenv ANT_HOME ~/apache-ant-1.6.5
setenv OMNI_INSTALL /home/mholder/CIPRES_dev/FullBuild/
setenv CIPRES_DIST_ROOT /home/mholder/CIPRES_dev/CIPRES-0.0.1/cipres/cipres_dist
setenv PIPRES_ROOT $CIPRES_DIST_ROOT/lib
setenv PYTHONPATH $PIPRES_ROOT/:$OMNI_INSTALL/lib/python2.3/site-packages
setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH/:$OMNI_INSTALL/lib/:$CIPRES_DIST_ROOT/lib/linux
setenv PATH $ANT_HOME/bin/:$JAVA_HOME/bin/:$PATH
setenv CLASSPATH $CIPRES_DIST_ROOT/lib/activation/jars/activation-1.0.2.jar:$CIPRES_DIST_ROOT/lib/axis/jars/axis-1.2-beta-3.jar:$CIPRES_DIST_ROOT/lib/axis/jars/axis-jaxrpc-1.2-beta-2.jar:$CIPRES_DIST_ROOT/lib/axis/jars/axis-saaj-1.2-beta-2.jar:$CIPRES_DIST_ROOT/lib/castor/jars/castor-0.9.5.3-xml.jar:$CIPRES_DIST_ROOT/lib/commons-discovery/jars/commons-discovery-0.2.jar:$CIPRES_DIST_ROOT/lib/commons-logging/jars/commons-logging-1.0.3.jar:$CIPRES_DIST_ROOT/lib/javahelp/jars/jh-2.0_02.jar:$CIPRES_DIST_ROOT/lib/javahelp/jars/jhbasic-2.0_02.jar:$CIPRES_DIST_ROOT/lib/jbcl/jars/jbcl-jbuilder-X.jar:$CIPRES_DIST_ROOT/lib/jcommon/jars/jcommon-0.9.1.jar:$CIPRES_DIST_ROOT/lib/jep/jars/jep-2.3.0.jar:$CIPRES_DIST_ROOT/lib/jfreechart/jars/jfreechart-0.9.16.jar:$CIPRES_DIST_ROOT/lib/junit/jars/junit-3.8.1.jar:$CIPRES_DIST_ROOT/lib/pal/jars/pal-1.5.1.zip:$CIPRES_DIST_ROOT/lib/uddi4j/jars/uddi4j-2-beta-1.jar:$CIPRES_DIST_ROOT/lib/wsdl4j/jars/wsdl4j-1.4.jar:$CIPRES_DIST_ROOT/lib/xerces/jars/xercesImpl-2.6.2.jar:$CIPRES_DIST_ROOT/lib/xml-apis/jars/xml-apis-2.0.2.jar:$CIPRES_DIST_ROOT/lib/jacorb/jars/antlr-2.7.2.jar:$CIPRES_DIST_ROOT/lib/jacorb/jars/avalon-framework-4.1.5.jar:$CIPRES_DIST_ROOT/lib/jacorb/jars/concurrent-1.3.2.jar:$CIPRES_DIST_ROOT/lib/jacorb/jars/jacorb.jar:$CIPRES_DIST_ROOT/lib/jacorb/jars/logkit-1.2.jar:$CIPRES_DIST_ROOT/lib/cipres/cipres_util.jar:$CIPRES_DIST_ROOT/lib/cipres/cipres_commlib.jar:$CIPRES_DIST_ROOT/lib/cipres/cipres_framework.jar:$CIPRES_DIST_ROOT/lib/cipres/cipres_guigen.jar:$CIPRES_DIST_ROOT/lib/cipres/cipres_phyloservices.jar:$CIPRES_DIST_ROOT/lib/cipres/cipres_cipresapp.jar

#setenv BOOST_ROOT /home/mholder/CIPRES_dev/boost_1_32_0
#setenv ACE_ROOT /home/mholder/CIPRES_dev/ACE-5.4+TAO-1.4/ACE_wrappers
#setenv TAO_ROOT $ACE_ROOT/TAO
#setenv JACORB_ROOT /home/mholder/CIPRES_dev/JacORB
#setenv OMNIORB_TOP /home/mholder/CIPRES_dev/omniORB-4.0.6
#setenv TAO_ORBSVCS Naming
#setenv CIPRES_CVS_ROOT /home/mholder/CIPRES_dev/CIPRES-0.0.1/cipres
#setenv CIPRES_LIB_ROOT $CIPRES_CVS_ROOT/framework
#setenv CIPRES_IDL_DIR $CIPRES_LIB_ROOT/IDL
#setenv PHYCAS_ROOT /home/mholder/CIPRES_dev/Phycas-0.0.1
#setenv NCL_ROOT /home/mholder/CIPRES_dev/Phycas-0.0.1
#setenv PHYCAS_ROOT /home/mholder/CIPRES_dev/Phycas-0.0.1