cipres/bin/cipresd.PL
cipres/bin/regsrv.PL
cipres/bin/regsrv_makepwd.PL
cipres/bin/xixi.PL
cipres/lib/Cipres.pm
cipres/lib/Cipres/CipresProperties.pm
cipres/lib/Cipres/CorbaService.pm
cipres/lib/Cipres/IDL.pm
cipres/lib/Cipres/IDL/CipresIDL_api1.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Advisor.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Advisor_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Advisor_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Advisor_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/AsyncTreeInfer.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/AsyncTreeInfer_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/AsyncTreeInfer_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/AsyncTreeInfer_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/AsyncTreeIterator.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/AsyncTreeIterator_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/AsyncTreeIterator_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/AsyncTreeIterator_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/CharacterDB.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/CharacterDB_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/CharacterDB_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/CharacterDB_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ChDBFactory.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ChDBFactory_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ChDBFactory_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ChDBFactory_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/CipresProperties.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/CipresProperties_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/CipresProperties_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/CipresProperties_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ConsensusTreeCalculator.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ConsensusTreeCalculator_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ConsensusTreeCalculator_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ConsensusTreeCalculator_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/DelegatingTreeImprove.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/DelegatingTreeImprove_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/DelegatingTreeImprove_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/DelegatingTreeImprove_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/LifeCycle.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/LifeCycle_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/LifeCycle_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/LifeCycle_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/MatrixAlign.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/MatrixAlign_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/MatrixAlign_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/MatrixAlign_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ObjectFactory.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ObjectFactory_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ObjectFactory_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ObjectFactory_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Properties.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Properties_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Properties_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Properties_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ReadNexus.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ReadNexus_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ReadNexus_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/ReadNexus_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/RecursiveScriptable.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/RecursiveScriptable_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/RecursiveScriptable_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/RecursiveScriptable_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Registry.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Registry_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Registry_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Registry_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/RendezVous.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/RendezVous_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/RendezVous_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/RendezVous_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Rid3TreeImprove.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Rid3TreeImprove_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Rid3TreeImprove_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Rid3TreeImprove_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Scriptable.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Scriptable_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Scriptable_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/Scriptable_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/SequentialTreeSupplier.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/SequentialTreeSupplier_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/SequentialTreeSupplier_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/SequentialTreeSupplier_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDB.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDB_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDB_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDB_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDBFactory.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDBFactory_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDBFactory_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDBFactory_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDecompose.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDecompose_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDecompose_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeDecompose_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeEvaluate.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeEvaluate_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeEvaluate_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeEvaluate_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeImprove.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeImprove_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeImprove_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeImprove_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeInfer.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeInfer_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeInfer_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeInfer_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeIterator.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeIterator_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeIterator_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeIterator_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeMerge.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeMerge_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeMerge_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeMerge_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreePrune.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreePrune_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreePrune_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreePrune_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeRefine.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeRefine_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeRefine_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeRefine_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeSupplier.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeSupplier_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeSupplier_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/TreeSupplier_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/WriteNexus.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/WriteNexus_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/WriteNexus_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api1/WriteNexus_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentSeqInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentSeqInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentSeqInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentSeqInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentSeqOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentSeqOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentSeqOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/AttachmentSeqOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataIO.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataIO_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataIO_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataIO_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixListInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixListInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixListInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixListInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixListOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixListOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixListOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixListOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/DataMatrixOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Iterator.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Iterator_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Iterator_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Iterator_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/LifeCycle.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/LifeCycle_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/LifeCycle_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/LifeCycle_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ModelEncoding.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ModelSupplier.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ModelSupplier_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ModelSupplier_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ModelSupplier_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/NumericBound.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ObjectFactory.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ObjectFactory_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ObjectFactory_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ObjectFactory_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/OpCode.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ParamConstraint.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ParamScope.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/ParamValue.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/RecursiveScriptable.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/RecursiveScriptable_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/RecursiveScriptable_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/RecursiveScriptable_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/RendezVous.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/RendezVous_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/RendezVous_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/RendezVous_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Scriptable.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Scriptable_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Scriptable_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Scriptable_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Stack.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Stack_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Stack_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/Stack_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaListInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaListInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaListInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaListInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaListOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaListOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaListOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaListOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxaOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxonInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxonInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxonInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxonInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxonOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxonOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxonOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TaxonOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeDB.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeDB_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeDB_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeDB_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeDBFactory.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeDBFactory_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeDBFactory_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeDBFactory_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeListInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeListInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeListInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeListInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeListOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeListOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeListOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeListOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeScoreInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeScoreInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeScoreInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeScoreInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeScoreOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeScoreOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeScoreOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreeScoreOutput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreesInput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreesInput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreesInput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreesInput_types.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreesOutput.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreesOutput_impl.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreesOutput_skel.pm
cipres/lib/Cipres/IDL/CipresIDL_api2/TreesOutput_types.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ConsumerAdmin.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ConsumerAdmin_impl.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ConsumerAdmin_skel.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ConsumerAdmin_types.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/EventChannel.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/EventChannel_impl.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/EventChannel_skel.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/EventChannel_types.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPullConsumer.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPullConsumer_impl.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPullConsumer_skel.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPullConsumer_types.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPullSupplier.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPullSupplier_impl.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPullSupplier_skel.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPullSupplier_types.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPushConsumer.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPushConsumer_impl.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPushConsumer_skel.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPushConsumer_types.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPushSupplier.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPushSupplier_impl.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPushSupplier_skel.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/ProxyPushSupplier_types.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/SupplierAdmin.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/SupplierAdmin_impl.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/SupplierAdmin_skel.pm
cipres/lib/Cipres/IDL/CosEventChannelAdmin/SupplierAdmin_types.pm
cipres/lib/Cipres/IDL/CosEventComm.pm
cipres/lib/Cipres/IDL/CosEventComm/PullConsumer.pm
cipres/lib/Cipres/IDL/CosEventComm/PullConsumer_impl.pm
cipres/lib/Cipres/IDL/CosEventComm/PullConsumer_skel.pm
cipres/lib/Cipres/IDL/CosEventComm/PullConsumer_types.pm
cipres/lib/Cipres/IDL/CosEventComm/PullSupplier.pm
cipres/lib/Cipres/IDL/CosEventComm/PullSupplier_impl.pm
cipres/lib/Cipres/IDL/CosEventComm/PullSupplier_skel.pm
cipres/lib/Cipres/IDL/CosEventComm/PullSupplier_types.pm
cipres/lib/Cipres/IDL/CosEventComm/PushConsumer.pm
cipres/lib/Cipres/IDL/CosEventComm/PushConsumer_impl.pm
cipres/lib/Cipres/IDL/CosEventComm/PushConsumer_skel.pm
cipres/lib/Cipres/IDL/CosEventComm/PushConsumer_types.pm
cipres/lib/Cipres/IDL/CosEventComm/PushSupplier.pm
cipres/lib/Cipres/IDL/CosEventComm/PushSupplier_impl.pm
cipres/lib/Cipres/IDL/CosEventComm/PushSupplier_skel.pm
cipres/lib/Cipres/IDL/CosEventComm/PushSupplier_types.pm
cipres/lib/Cipres/Objects.pm
cipres/lib/Cipres/Objects/Char.pm
cipres/lib/Cipres/Objects/CharMatrix.pm
cipres/lib/Cipres/Objects/CharSeq.pm
cipres/lib/Cipres/Objects/Forest.pm
cipres/lib/Cipres/Objects/Matrix.pm
cipres/lib/Cipres/Objects/Node.pm
cipres/lib/Cipres/Objects/Taxa.pm
cipres/lib/Cipres/Objects/Taxon.pm
cipres/lib/Cipres/Objects/Tree.pm
cipres/lib/Cipres/Registry.pm
cipres/lib/Cipres/Registry/BufferServer.pm
cipres/lib/Cipres/Registry/Config.pm
cipres/lib/Cipres/Registry/Observable.pm
cipres/lib/Cipres/ServiceInstaller.pm
cipres/lib/Cipres/Services/AsyncTreeInfer.pm
cipres/lib/Cipres/Services/AsyncTreeIterator.pm
cipres/lib/Cipres/SuperClasses/Authenticator.pm
cipres/lib/Cipres/SuperClasses/CorbaClient.pm
cipres/lib/Cipres/SuperClasses/ProcessLauncher.pm
cipres/lib/Cipres/SuperClasses/Root.pm
cipres/lib/Cipres/Util.pod
cipres/lib/Cipres/Util/Client.pm
cipres/lib/Cipres/Util/Converter.pm
cipres/lib/Cipres/Util/Properties.pm
cipres/lib/Cipres/Util/Service.pm
cipres/lib/Cipres/Util/TypeConverter.pm
cipres/lib/Cipres/Util/TypeConverter/Datum.pm
cipres/lib/Cipres/Util/TypeConverter/Default.pm
cipres/lib/Cipres/Util/TypeConverter/Forest.pm
cipres/lib/Cipres/Util/TypeConverter/Matrices.pm
cipres/lib/Cipres/Util/TypeConverter/Matrix.pm
cipres/lib/Cipres/Util/TypeConverter/Node.pm
cipres/lib/Cipres/Util/TypeConverter/Taxa.pm
cipres/lib/Cipres/Util/TypeConverter/Taxon.pm
cipres/lib/Cipres/Util/TypeConverter/Tree.pm
cipres/lib/xul-node/xul/help.html
cipres/lib/xul-node/xul/images/add.png
cipres/lib/xul-node/xul/images/BC-R.jpg
cipres/lib/xul-node/xul/images/BitMaps_0.png
cipres/lib/xul-node/xul/images/BitMaps_1.png
cipres/lib/xul-node/xul/images/BitMaps_10.png
cipres/lib/xul-node/xul/images/BitMaps_11.png
cipres/lib/xul-node/xul/images/BitMaps_12.png
cipres/lib/xul-node/xul/images/BitMaps_13.png
cipres/lib/xul-node/xul/images/BitMaps_14.png
cipres/lib/xul-node/xul/images/BitMaps_15.png
cipres/lib/xul-node/xul/images/BitMaps_16.png
cipres/lib/xul-node/xul/images/BitMaps_17.png
cipres/lib/xul-node/xul/images/BitMaps_18.png
cipres/lib/xul-node/xul/images/BitMaps_19.png
cipres/lib/xul-node/xul/images/BitMaps_2.png
cipres/lib/xul-node/xul/images/BitMaps_20.png
cipres/lib/xul-node/xul/images/BitMaps_21.png
cipres/lib/xul-node/xul/images/BitMaps_22.png
cipres/lib/xul-node/xul/images/BitMaps_23.png
cipres/lib/xul-node/xul/images/BitMaps_3.png
cipres/lib/xul-node/xul/images/BitMaps_4.png
cipres/lib/xul-node/xul/images/BitMaps_5.png
cipres/lib/xul-node/xul/images/BitMaps_6.png
cipres/lib/xul-node/xul/images/BitMaps_7.png
cipres/lib/xul-node/xul/images/BitMaps_8.png
cipres/lib/xul-node/xul/images/BitMaps_9.png
cipres/lib/xul-node/xul/images/BitMapsList_0.png
cipres/lib/xul-node/xul/images/BitMapsList_1.png
cipres/lib/xul-node/xul/images/BitMapsList_10.png
cipres/lib/xul-node/xul/images/BitMapsList_11.png
cipres/lib/xul-node/xul/images/BitMapsList_12.png
cipres/lib/xul-node/xul/images/BitMapsList_13.png
cipres/lib/xul-node/xul/images/BitMapsList_2.png
cipres/lib/xul-node/xul/images/BitMapsList_3.png
cipres/lib/xul-node/xul/images/BitMapsList_4.png
cipres/lib/xul-node/xul/images/BitMapsList_5.png
cipres/lib/xul-node/xul/images/BitMapsList_6.png
cipres/lib/xul-node/xul/images/BitMapsList_7.png
cipres/lib/xul-node/xul/images/BitMapsList_8.png
cipres/lib/xul-node/xul/images/BitMapsList_9.png
cipres/lib/xul-node/xul/images/accept.png
cipres/lib/xul-node/xul/images/blue_apple.png
cipres/lib/xul-node/xul/images/chick.png
cipres/lib/xul-node/xul/images/cog.png
cipres/lib/xul-node/xul/images/cog_error.png
cipres/lib/xul-node/xul/images/cog_unknown.png
cipres/lib/xul-node/xul/images/computer.png
cipres/lib/xul-node/xul/images/computer_add.png
cipres/lib/xul-node/xul/images/computer_delete.png
cipres/lib/xul-node/xul/images/computer_link.png
cipres/lib/xul-node/xul/images/cyan_apple.png
cipres/lib/xul-node/xul/images/database_gear.png
cipres/lib/xul-node/xul/images/delete.png
cipres/lib/xul-node/xul/images/disconnect.png
cipres/lib/xul-node/xul/images/green_apple.png
cipres/lib/xul-node/xul/images/help.png
cipres/lib/xul-node/xul/images/house.png
cipres/lib/xul-node/xul/images/logo_cipres.png
cipres/lib/xul-node/xul/images/magenta_apple.png
cipres/lib/xul-node/xul/images/red_apple.png
cipres/lib/xul-node/xul/images/reg_fed.png
cipres/lib/xul-node/xul/images/reg_fed_error.png
cipres/lib/xul-node/xul/images/reg_fed_last.png
cipres/lib/xul-node/xul/images/reg_fed_last_error.png
cipres/lib/xul-node/xul/images/reg_fed_new.png
cipres/lib/xul-node/xul/images/reg_fed_new_last.png
cipres/lib/xul-node/xul/images/reg_home.png
cipres/lib/xul-node/xul/images/reg_home_new.png
cipres/lib/xul-node/xul/images/tiny-chick.png
cipres/lib/xul-node/xul/images/user.png
cipres/lib/xul-node/xul/images/world.png
cipres/lib/xul-node/xul/images/yellow_apple.png
cipres/lib/xul-node/xul/index.html
cipres/lib/xul-node/xul/jslib/AllTests.js
cipres/lib/xul-node/xul/jslib/Client/Application.js
cipres/lib/xul-node/xul/jslib/Client/Runner.js
cipres/lib/xul-node/xul/jslib/Client/ServerProxy.js
cipres/lib/xul-node/xul/jslib/Client/ServerResponse.js
cipres/lib/xul-node/xul/jslib/Client/tests/AllTests.js
cipres/lib/xul-node/xul/jslib/Client/tests/ServerProxy.js
cipres/lib/xul-node/xul/jslib/Test/Assert.js
cipres/lib/xul-node/xul/jslib/Test/AssertionFailedError.js
cipres/lib/xul-node/xul/jslib/Test/Case.js
cipres/lib/xul-node/xul/jslib/Test/Failure.js
cipres/lib/xul-node/xul/jslib/Test/Result.js
cipres/lib/xul-node/xul/jslib/Test/Runner.js
cipres/lib/xul-node/xul/jslib/Test/Suite.js
cipres/lib/xul-node/xul/jslib/Test/tests/AllTests.js
cipres/lib/xul-node/xul/jslib/Test/tests/Assert.js
cipres/lib/xul-node/xul/jslib/Test/tests/Suite.js
cipres/lib/xul-node/xul/jslib/Util/BootStrap.js
cipres/lib/xul-node/xul/jslib/Util/tests/AllTests.js
cipres/lib/xul-node/xul/jslib/Util/tests/BootStrap.js
cipres/lib/xul-node/xul/NS6lib.js
cipres/lib/xul-node/xul/start.xul
cipres/lib/xul-node/xul/tests.xul
cipres/lib/XUL/Node/Application/Regman.pm
cipres/Makefile.PL
cipres/MANIFEST
cipres/META.yml
cope/Artistic
cope/bin/cope-announcer.PL
cope/bin/cope-ns.PL
cope/bin/idl2perl.PL
cope/bin/irserv_jacorb.PL
cope/Build.PL
cope/Changes
cope/compat/MICO/irior.cc
cope/compat/MICO/irserv
cope/compat/README
cope/compat/VisiBroker/irserv.cc
cope/examples/ce_client
cope/examples/ce_server
cope/examples/copex.idl
cope/examples/Copex.pm
cope/examples/Copex/OnDemand.pm
cope/examples/Copex/OnDemand_impl.pm
cope/examples/Copex/OnDemand_skel.pm
cope/examples/Copex/OnDemand_types.pm
cope/examples/Copex/OneServant.pm
cope/examples/Copex/OneServant_impl.pm
cope/examples/Copex/OneServant_skel.pm
cope/examples/Copex/OneServant_types.pm
cope/examples/Copex/Persistent.pm
cope/examples/Copex/Persistent_impl.pm
cope/examples/Copex/Persistent_skel.pm
cope/examples/Copex/Persistent_types.pm
cope/examples/Copex/Supervisor.pm
cope/examples/Copex/Supervisor_impl.pm
cope/examples/Copex/Supervisor_skel.pm
cope/examples/Copex/Supervisor_types.pm
cope/examples/Copex/Temp.pm
cope/examples/Copex/Temp_impl.pm
cope/examples/Copex/Temp_skel.pm
cope/examples/Copex/Temp_types.pm
cope/examples/Makefile
cope/examples/README
cope/idl/Data.idl
cope/idl/Extra.idl
cope/idl/IR.idl
cope/idl/Naming.idl
cope/idl/Test.idl
cope/lib/COPE.pm
cope/lib/COPE.pod
cope/lib/COPE/Announcer.pm
cope/lib/COPE/CORBA/Any.pm
cope/lib/COPE/CORBA/BOA.pm
cope/lib/COPE/CORBA/Client.pm
cope/lib/COPE/CORBA/Exception.pm
cope/lib/COPE/CORBA/LongLong.pm
cope/lib/COPE/CORBA/Object.pm
cope/lib/COPE/CORBA/ORB.pm
cope/lib/COPE/CORBA/Request.pm
cope/lib/COPE/CORBA/Servant.pm
cope/lib/COPE/CORBA/ServerRequest.pm
cope/lib/COPE/CORBA/Skel.pm
cope/lib/COPE/CORBA/StrToObj.pm
cope/lib/COPE/CORBA/TCKind.pm
cope/lib/COPE/CORBA/TCMarshal.pm
cope/lib/COPE/CORBA/TypeCode.pm
cope/lib/COPE/CosNaming.pm
cope/lib/COPE/CosNaming_impl.pm
cope/lib/COPE/CosNaming_skel.pm
cope/lib/COPE/CosNaming_types.pm
cope/lib/COPE/GIOP.pm
cope/lib/COPE/IOP.pm
cope/lib/COPE/IOPSSL.pm
cope/lib/COPE/IR.pm
cope/lib/COPE/IR_types.pm
cope/lib/COPE/LName.pm
cope/Makefile.PL
cope/prototypes.txt
cope/README
cope/README.04_x
cope/t/01-distribution.t
cope/t/02-pod.t
cope/t/03-pod-coverage.t
cope/t/announcer.t
cope/t/base.t
cope/t/base2.t
cope/t/base3.t
cope/t/COPE/Data.pm
cope/t/COPE/Data/Anything.pm
cope/t/COPE/Data/Anything_impl.pm
cope/t/COPE/Data/Anything_skel.pm
cope/t/COPE/Data/Anything_types.pm
cope/t/COPE/Data/Testem.pm
cope/t/COPE/Data/Testem_impl.pm
cope/t/COPE/Data/Testem_skel.pm
cope/t/COPE/Data/Testem_types.pm
cope/t/COPE/Extra.pm
cope/t/COPE/Extra1.pm
cope/t/COPE/Extra1_impl.pm
cope/t/COPE/Extra1_skel.pm
cope/t/COPE/Extra1_types.pm
cope/t/COPE/Outside.pm
cope/t/COPE/Outside/Swapper.pm
cope/t/COPE/Outside/Swapper_impl.pm
cope/t/COPE/Outside/Swapper_skel.pm
cope/t/COPE/Outside/Swapper_types.pm
cope/t/COPE/Test.pm
cope/t/COPE/Test/Test1.pm
cope/t/COPE/Test/Test1_impl.pm
cope/t/COPE/Test/Test1_skel.pm
cope/t/COPE/Test/Test1_types.pm
cope/t/COPE/Test/Test2.pm
cope/t/COPE/Test/Test2_impl.pm
cope/t/COPE/Test/Test2_skel.pm
cope/t/COPE/Test/Test2_types.pm
cope/t/COPE/Test/Test3.pm
cope/t/COPE/Test/Test3_impl.pm
cope/t/COPE/Test/Test3_skel.pm
cope/t/COPE/Test/Test3_types.pm
cope/t/COPE/Test/Test4.pm
cope/t/COPE/Test/Test4_impl.pm
cope/t/COPE/Test/Test4_skel.pm
cope/t/COPE/Test/Test4_types.pm
cope/t/naming.t
cope/t/proto.t
cope/t/test2server.pl
cope/t/test3server.pl
cope/t/testserver.pl
doc/README.txt
etc/Cipres/Config.pm
etc/Cipres/Prereq.pm
etc/perlvars.bashrc
etc/perlvars.bat
Makefile.PL
MANIFEST			This list of files
MANIFEST.skip
META.yml
phylo/bin/age2bl.pl
phylo/bin/bremer.pl
phylo/bin/dnd2svg.pl
phylo/bin/dndtag.pl
phylo/bin/droptip.pl
phylo/bin/LRmb.pl
phylo/bin/postmb.pl
phylo/Build.PL
phylo/Changes
phylo/Doxyfile
phylo/lib/Bio/ObjectCompat.pod
phylo/lib/Bio/Phylo.pm
phylo/lib/Bio/Phylo/Adaptor.pm
phylo/lib/Bio/Phylo/Adaptor/Bioperl/Datum.pm
phylo/lib/Bio/Phylo/Adaptor/Bioperl/Matrix.pm
phylo/lib/Bio/Phylo/Adaptor/Bioperl/Node.pm
phylo/lib/Bio/Phylo/Adaptor/Bioperl/Tree.pm
phylo/lib/Bio/Phylo/Forest.pm
phylo/lib/Bio/Phylo/Forest/Node.pm
phylo/lib/Bio/Phylo/Forest/Tree.pm
phylo/lib/Bio/Phylo/Generator.pm
phylo/lib/Bio/Phylo/IO.pm
phylo/lib/Bio/Phylo/Listable.pm
phylo/lib/Bio/Phylo/Manual.pod
phylo/lib/Bio/Phylo/Matrices.pm
phylo/lib/Bio/Phylo/Matrices/Datatype.pm
phylo/lib/Bio/Phylo/Matrices/Datatype/Continuous.pm
phylo/lib/Bio/Phylo/Matrices/Datatype/Custom.pm
phylo/lib/Bio/Phylo/Matrices/Datatype/Dna.pm
phylo/lib/Bio/Phylo/Matrices/Datatype/Mixed.pm
phylo/lib/Bio/Phylo/Matrices/Datatype/Protein.pm
phylo/lib/Bio/Phylo/Matrices/Datatype/Restriction.pm
phylo/lib/Bio/Phylo/Matrices/Datatype/Rna.pm
phylo/lib/Bio/Phylo/Matrices/Datatype/Standard.pm
phylo/lib/Bio/Phylo/Matrices/Datum.pm
phylo/lib/Bio/Phylo/Matrices/Matrix.pm
phylo/lib/Bio/Phylo/Matrices/TypeSafeData.pm
phylo/lib/Bio/Phylo/Mediators/TaxaMediator.pm
phylo/lib/Bio/Phylo/Parsers/Newick.pm
phylo/lib/Bio/Phylo/Parsers/Nexus.pm
phylo/lib/Bio/Phylo/Parsers/Table.pm
phylo/lib/Bio/Phylo/Parsers/Taxlist.pm
phylo/lib/Bio/Phylo/Taxa.pm
phylo/lib/Bio/Phylo/Taxa/TaxaLinker.pm
phylo/lib/Bio/Phylo/Taxa/Taxon.pm
phylo/lib/Bio/Phylo/Taxa/TaxonLinker.pm
phylo/lib/Bio/Phylo/Treedrawer.pm
phylo/lib/Bio/Phylo/Treedrawer/Svg.pm
phylo/lib/Bio/Phylo/Unparsers/Mrp.pm
phylo/lib/Bio/Phylo/Unparsers/Newick.pm
phylo/lib/Bio/Phylo/Unparsers/Nexus.pm
phylo/lib/Bio/Phylo/Unparsers/Pagel.pm
phylo/lib/Bio/Phylo/Util/CONSTANT.pm
phylo/lib/Bio/Phylo/Util/Exceptions.pm
phylo/lib/Bio/Phylo/Util/IDPool.pm
phylo/lib/Bio/Phylo/Util/XMLWritable.pm
phylo/lib/Bio/README
phylo/lib/Bio/Tools/Run/MrBayes.pm
phylo/Makefile.PL
phylo/MANIFEST
phylo/MANIFEST.skip
phylo/META.yml
phylo/README
phylo/t/00-load.t
phylo/t/01-phylo.t
phylo/t/02-newick.t
phylo/t/03-node.t
phylo/t/04-generator.t
phylo/t/05-trees.t
phylo/t/06-tree.t
phylo/t/07-unparse.t
phylo/t/08-datum.t
phylo/t/09-matrix.t
phylo/t/10-matrices.t
phylo/t/11-taxon.t
phylo/t/12-taxa.t
phylo/t/13-listable.t
phylo/t/14-nexus.t
phylo/t/15-table.t
phylo/t/16-unparse.t
phylo/t/17-parse.t
phylo/t/18-taxlist.t
phylo/t/19-svg.t
phylo/t/pod-coverage.t
phylo/t/pod.t
phylo/t/regress_18208.t
phylo/t/regress_21209.t
phylo/t/regress_21417.t
phylo/t/regress_22813.t
phylo/t/regress_26332.t
README.txt