GUIXML_FILES =                           \
	xml/gui/dcm3.xml                     \
	xml/gui/garli_improve.xml            \
	xml/gui/mrbayes.xml                  \
	xml/gui/inFile.xml                   \
	xml/gui/nexusFile.xml                \
	xml/gui/paup_evaluate.xml            \
	xml/gui/paup_infer.xml               \
	xml/gui/paup_improve.xml             \
	xml/gui/rand_dcm3.xml                \
	xml/gui/raxml_improve.xml            \
	xml/gui/realigning_tree_improver.xml \
	xml/gui/recidcm3.xml                 \
	xml/gui/SequenceAlign_Clustal.xml    \
	xml/gui/tl_rid3.xml                  \
	xml/gui/tnt_LargeTreeInference.xml   \
	xml/gui/tnt_SmallTreeInference.xml 

JAVAHELP_FILES = \
	help/javahelp/Map.jhm \
	help/javahelp/cipresHelp.hs \
	help/javahelp/cipresHelpTOC.xml \
	help/javahelp/JavaHelpSearch/DOCS \
	help/javahelp/JavaHelpSearch/DOCS.TAB \
	help/javahelp/JavaHelpSearch/OFFSETS \
	help/javahelp/JavaHelpSearch/POSITIONS \
	help/javahelp/JavaHelpSearch/SCHEMA \
	help/javahelp/JavaHelpSearch/TMAP \
	help/javahelp/META-INF/MANIFEST.MF \
	help/javahelp/cipreshelp/cipres.html \
	help/javahelp/images/Dcm3.JPG \
	help/javahelp/images/DirStructure.jpg \
	help/javahelp/images/SettingsAndPrefs_Files.JPG \
	help/javahelp/images/SettingsAndPrefs_SvcsAndApps.JPG \
	help/javahelp/images/legacyAppLauncher.jpg 

SAMPLE_FILES = \
	help/sampleFiles/11361Tx1360C.nex \
	help/sampleFiles/12Tx432C.nex \
	help/sampleFiles/49Tx2543C.nex \
	help/sampleFiles/500Tx759C.nex \
	help/sampleFiles/567Tx2153C.nex \
	help/sampleFiles/7180Tx1359C.nex \
	help/sampleFiles/MrBayesTestScript.txt \
	help/sampleFiles/TestNexusFile.nex \
	help/sampleFiles/TestWithoutTree.nex \
	help/sampleFiles/avian_ovomucoids.nex \
	help/sampleFiles/mrB_9Tx720C.nex \
	help/sampleFiles/rbcl500T.nex \
	help/sampleFiles/rbcl500TPaupTree.nex

RESOURCE_FILES = \
	resources/install.properties \
	resources/system.properties \
	resources/log4j.properties \
	resources/jacorb.properties \
	resources/debugging_logging.conf            \
	resources/logging_pipres.conf               \
	resources/services/org.cipres.core_v@PACKAGE_VERSION@/configure.xml \
	resources/services/org.cipres.core_v@PACKAGE_VERSION@/registry.xml \
	resources/optional_services/org.cipres.PIPRes-realiging-tree-search/configure.xml \
	resources/optional_services/org.cipres.PIPRes-realiging-tree-search/registry.xml \
	resources/optional_services/org.cipres.garli/configure.xml \
	resources/optional_services/org.cipres.garli/registry.xml \
	resources/optional_services/org.cipres.raxml/configure.xml \
	resources/optional_services/org.cipres.raxml/registry.xml 	


nobase_dist_pkgdata_DATA = 	\
	$(GUIXML_FILES)   \
	$(JAVAHELP_FILES) \
	$(SAMPLE_FILES)   \
	$(RESOURCE_FILES)

install-data-hook:
#	cp $(DESTDIR)$(pkgdatadir)/resources/cipres_config_template.properties $(DESTDIR)$(pkgdatadir)/resources/cipres_config.properties