package org.cipres.kepler.jrun;

import org.cipres.helpers.GUIRun;

public class GUIRunTester {

	/**
	 * @param args
	 */
	public static void main(String[] args) {
		
		try {
			GUIRun grun = new GUIRun("ClustalW");
			grun.setExecutable("/Users/borchers/work/ClustalW/clustalw");
			grun.setUIXMLFile("/Users/borchers/work/ClustalW/clustalw.xml");
			grun.setArgumentsWithGUIGen();
			grun.setOutputFilename("/Users/borchers/work/ClustalW/runout");
			grun.setErrorFilename("/Users/borchers/work/ClustalW/runerror");
			grun.setWorkingDirPath("/Users/borchers/work/ClustalW/");
			grun.setWaitForExecution(true);
			System.out.println(grun.execute());
			System.out.println(grun.getExitCode());
			System.out.println("Standard Output: \n" + grun.getStandardOutput());
			System.out.println("Standard Error: \n" + grun.getStandardError());
			System.exit(0);
		} catch (Exception e) {
			// TODO Auto-generated catch block
			e.printStackTrace();
		}

	}

}